Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001985-TA|BGIBMGA001985-PA|IPR002110|Ankyrin
(664 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|ch... 63 1e-10
SPAC6C3.08 |||gankyrin|Schizosaccharomyces pombe|chr 1|||Manual 49 2e-06
SPAPB1E7.05 |gde1||glycerophosphoryl diester phosphodiesterase G... 49 2e-06
SPAC26H5.05 |||IPT/TIG ankyrin repeat protein|Schizosaccharomyce... 42 4e-04
SPCP1E11.10 |||ankyrin repeat protein, unknown biological role|S... 40 8e-04
SPAC13D6.04c |btb3||BTB/POZ domain protein Btb3|Schizosaccharomy... 39 0.002
SPBP16F5.05c |||ribosome biogenesis protein Nop8|Schizosaccharom... 39 0.002
SPAC22F3.09c |res2|mcs1, pct1|MBF transcription factor complex s... 37 0.008
SPBC2F12.05c |||sterol binding ankyrin repeat protein|Schizosacc... 33 0.096
SPCC1827.04 |||ankyrin repeat protein, unknown biological role|S... 30 0.90
SPBC365.12c |ish1||LEA domain protein|Schizosaccharomyces pombe|... 29 1.6
SPBC31F10.11c |cwf4|syf3|complexed with Cdc5 protein Cwf4 |Schiz... 29 1.6
SPAC22H10.03c |kap114||karyopherin Kap14|Schizosaccharomyces pom... 28 3.6
SPBC1A4.07c |||U3 snoRNP-associated protein Sof1|Schizosaccharom... 27 6.3
SPBC691.03c |apl3||AP-2 adaptor complex subunit Alp3 |Schizosacc... 27 6.3
>SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 642
Score = 62.9 bits (146), Expect = 1e-10
Identities = 50/138 (36%), Positives = 71/138 (51%), Gaps = 2/138 (1%)
Query: 105 GATALWCASGAGHLAIVKRLVKAGADVNHATRTV-STPLRAACFEGRLDIVKYLVRHGAD 163
GATAL A+ + I K L++ GADVN + + P+ A G + V YLV+HGAD
Sbjct: 34 GATALHWAALNQQIPICKFLLEHGADVNAIGGDLQAAPIHWAAKRGSVKTVHYLVQHGAD 93
Query: 164 IHKANKYNNTCLMIAAYKGYLDVVQFLLDSGARVDDRALCGATALHFAAECGHAAVVCSL 223
+K CL +A + +V +LL VD R T L +A+ G+ + L
Sbjct: 94 PLLKDKQGFNCLHLAVHAASPLLVVYLLHLDISVDLRDDQQHTPLMWASYHGNEPITNCL 153
Query: 224 LDHGAKML-TNENGMTPL 240
L GA +L T+E+ MTPL
Sbjct: 154 LRWGADVLATDEDKMTPL 171
Score = 48.0 bits (109), Expect = 4e-06
Identities = 40/151 (26%), Positives = 64/151 (42%), Gaps = 3/151 (1%)
Query: 108 ALWCASGAGHLAIVKRLVKAGA-DVNHATRTVSTPLRAACFEGRLDIVKYLVRHGADIHK 166
+L+ A+ G L VK L+ + DVN +T L A ++ I K+L+ HGAD++
Sbjct: 3 SLFLAASQGELDTVKNLISSEKIDVNATDEGGATALHWAALNQQIPICKFLLEHGADVNA 62
Query: 167 -ANKYNNTCLMIAAYKGYLDVVQFLLDSGARVDDRALCGATALHFAAECGHAAVVCSLLD 225
+ AA +G + V +L+ GA + G LH A +V LL
Sbjct: 63 IGGDLQAAPIHWAAKRGSVKTVHYLVQHGADPLLKDKQGFNCLHLAVHAASPLLVVYLLH 122
Query: 226 HGAKM-LTNENGMTPLQCAAERARASVVEIL 255
+ L ++ TPL A+ + L
Sbjct: 123 LDISVDLRDDQQHTPLMWASYHGNEPITNCL 153
Score = 29.1 bits (62), Expect = 2.1
Identities = 24/91 (26%), Positives = 37/91 (40%)
Query: 104 EGATALWCASGAGHLAIVKRLVKAGADVNHATRTVSTPLRAACFEGRLDIVKYLVRHGAD 163
+G L A A +V L+ V+ TPL A + G I L+R GAD
Sbjct: 100 QGFNCLHLAVHAASPLLVVYLLHLDISVDLRDDQQHTPLMWASYHGNEPITNCLLRWGAD 159
Query: 164 IHKANKYNNTCLMIAAYKGYLDVVQFLLDSG 194
+ ++ T L + G L ++ +L G
Sbjct: 160 VLATDEDKMTPLHWSIVGGNLKCMKLILKEG 190
Score = 27.5 bits (58), Expect = 6.3
Identities = 13/28 (46%), Positives = 18/28 (64%)
Query: 543 LLDCGADVDAADMNRRTPLHVALISYQL 570
LL GADV A D ++ TPLH +++ L
Sbjct: 153 LLRWGADVLATDEDKMTPLHWSIVGGNL 180
>SPAC6C3.08 |||gankyrin|Schizosaccharomyces pombe|chr 1|||Manual
Length = 234
Score = 49.2 bits (112), Expect = 2e-06
Identities = 32/92 (34%), Positives = 48/92 (52%), Gaps = 1/92 (1%)
Query: 105 GATALWCASGAGHLAIVKRLV-KAGADVNHATRTVSTPLRAACFEGRLDIVKYLVRHGAD 163
G T L A+G G L+IV+ L KA + TPL A G++ +VKYL+ A
Sbjct: 107 GQTCLHYAAGKGRLSIVQLLCDKAPELIRKKDLQGQTPLHRAAAVGKIQVVKYLISQRAP 166
Query: 164 IHKANKYNNTCLMIAAYKGYLDVVQFLLDSGA 195
++ ++ Y T L A +G+ DV L+ +GA
Sbjct: 167 LNTSDSYGFTPLHFALAEGHPDVGVELVRAGA 198
Score = 48.8 bits (111), Expect = 2e-06
Identities = 40/130 (30%), Positives = 61/130 (46%), Gaps = 3/130 (2%)
Query: 120 IVKRLV-KAGADVNHATRTVSTPLRAACFEGRLDIVKYLVRHGAD-IHKANKYNNTCLMI 177
+++ L+ ++ D TR T L A +GRL IV+ L + I K + T L
Sbjct: 88 VIEELINRSDVDPTITTRGGQTCLHYAAGKGRLSIVQLLCDKAPELIRKKDLQGQTPLHR 147
Query: 178 AAYKGYLDVVQFLLDSGARVDDRALCGATALHFAAECGHAAVVCSLLDHGAKMLTNEN-G 236
AA G + VV++L+ A ++ G T LHFA GH V L+ GA L ++
Sbjct: 148 AAAVGKIQVVKYLISQRAPLNTSDSYGFTPLHFALAEGHPDVGVELVRAGADTLRKDSEN 207
Query: 237 MTPLQCAAER 246
T L+ +R
Sbjct: 208 HTALEVCPDR 217
Score = 45.2 bits (102), Expect = 3e-05
Identities = 26/75 (34%), Positives = 39/75 (52%)
Query: 103 IEGATALWCASGAGHLAIVKRLVKAGADVNHATRTVSTPLRAACFEGRLDIVKYLVRHGA 162
++G T L A+ G + +VK L+ A +N + TPL A EG D+ LVR GA
Sbjct: 139 LQGQTPLHRAAAVGKIQVVKYLISQRAPLNTSDSYGFTPLHFALAEGHPDVGVELVRAGA 198
Query: 163 DIHKANKYNNTCLMI 177
D + + N+T L +
Sbjct: 199 DTLRKDSENHTALEV 213
Score = 37.9 bits (84), Expect = 0.004
Identities = 34/126 (26%), Positives = 64/126 (50%), Gaps = 8/126 (6%)
Query: 140 TPLRAACFEGRLDIVKYLVRH-GADIHKANKYNNTCLMIAAYKGYL--DVVQFLLDSGAR 196
TPL AC G+++ + +L++ + ++ T LMI+ + +V++ L++ +
Sbjct: 39 TPLHWACSVGKVNTIYFLLKQPNIKPDEKDEAGWTPLMISINNRSVPDNVIEELINR-SD 97
Query: 197 VDDRALC--GATALHFAAECGHAAVVCSLLDHGAKMLTNEN--GMTPLQCAAERARASVV 252
VD G T LH+AA G ++V L D +++ ++ G TPL AA + VV
Sbjct: 98 VDPTITTRGGQTCLHYAAGKGRLSIVQLLCDKAPELIRKKDLQGQTPLHRAAAVGKIQVV 157
Query: 253 EILAAR 258
+ L ++
Sbjct: 158 KYLISQ 163
>SPAPB1E7.05 |gde1||glycerophosphoryl diester phosphodiesterase
Gde1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1076
Score = 48.8 bits (111), Expect = 2e-06
Identities = 37/109 (33%), Positives = 56/109 (51%), Gaps = 2/109 (1%)
Query: 109 LWCASGAGHLAIVKRLVKAGADVNHATRTVSTPLRAACFEGRLDIVKYLVRHGADIHKAN 168
L C G L IV+ L+ AG + N + +T L A R + VK L++ GA+ +
Sbjct: 339 LTCCVGDYDL-IVEELILAGFNPNEVDASSNTALHTAVRYNRPECVKMLLKLGANPSARD 397
Query: 169 KYNN-TCLMIAAYKGYLDVVQFLLDSGARVDDRALCGATALHFAAECGH 216
N+ T LM+A+ G ++V L+ SGA VD+ G TA+ A G+
Sbjct: 398 FLNSWTPLMLASATGLSEIVSILVASGASVDEVDSSGWTAMEQAVVRGY 446
>SPAC26H5.05 |||IPT/TIG ankyrin repeat protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1151
Score = 41.5 bits (93), Expect = 4e-04
Identities = 33/127 (25%), Positives = 59/127 (46%), Gaps = 7/127 (5%)
Query: 119 AIVKRLVKAGADVNHATRTVSTPLRAACFEGRLDIVKYLVRHGADIHKANKYNNTCLMIA 178
+++ R+VK D N + +V + + AA YL +D N+ + L +
Sbjct: 816 SVISRIVKK--DSNQSDDSVESTILAAFALVTDTTTPYL----SDFSLVNESGRSLLHLT 869
Query: 179 AYKGYLDVVQFLLDSGARVDDRALCGATALHFAAECGHAAVVCSLLDHGAKM-LTNENGM 237
A G + FL ++G V+ R G T LH+A+ H + +LL +GAK + +G
Sbjct: 870 AACGLSNASTFLCNAGCDVNKRDALGYTPLHYASLYDHKDICVNLLSNGAKPDVIGASGK 929
Query: 238 TPLQCAA 244
P+ ++
Sbjct: 930 KPIDLSS 936
Score = 29.5 bits (63), Expect = 1.6
Identities = 26/99 (26%), Positives = 40/99 (40%), Gaps = 13/99 (13%)
Query: 537 ARTSRLLLDCGADVDAADMNRRTPLHVALISYQLTSDDREQYNEAFCGVVCELLSRGAHV 596
+ S L + G DV+ D TPLH Y D ++ + LLS GA
Sbjct: 875 SNASTFLCNAGCDVNKRDALGYTPLH-----YASLYDHKD--------ICVNLLSNGAKP 921
Query: 597 DAMDLDGITPLVASIGGPAESLVRSALRPRLSCISASVL 635
D + G P+ S P + + + A + IS S++
Sbjct: 922 DVIGASGKKPIDLSSSEPIKLVFKEANNEQAQSISRSLI 960
>SPCP1E11.10 |||ankyrin repeat protein, unknown biological
role|Schizosaccharomyces pombe|chr 3|||Manual
Length = 207
Score = 40.3 bits (90), Expect = 8e-04
Identities = 21/69 (30%), Positives = 34/69 (49%)
Query: 109 LWCASGAGHLAIVKRLVKAGADVNHATRTVSTPLRAACFEGRLDIVKYLVRHGADIHKAN 168
+W A+ G +V + + +G N A TP+ AA G D++K LV G DI+ +
Sbjct: 8 IWIAASDGKTDVVLKHLDSGISPNAADENGYTPIHAAVSYGHSDLLKILVERGGDINIRD 67
Query: 169 KYNNTCLMI 177
+ T L +
Sbjct: 68 QDGETPLFV 76
Score = 36.3 bits (80), Expect = 0.014
Identities = 23/67 (34%), Positives = 36/67 (53%), Gaps = 1/67 (1%)
Query: 175 LMIAAYKGYLDVVQFLLDSGARVDDRALCGATALHFAAECGHAAVVCSLLDHGAKM-LTN 233
+ IAA G DVV LDSG + G T +H A GH+ ++ L++ G + + +
Sbjct: 8 IWIAASDGKTDVVLKHLDSGISPNAADENGYTPIHAAVSYGHSDLLKILVERGGDINIRD 67
Query: 234 ENGMTPL 240
++G TPL
Sbjct: 68 QDGETPL 74
Score = 29.1 bits (62), Expect = 2.1
Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Query: 211 AAECGHAAVVCSLLDHG-AKMLTNENGMTPLQCAAERARASVVEILAAR 258
AA G VV LD G + +ENG TP+ A + +++IL R
Sbjct: 11 AASDGKTDVVLKHLDSGISPNAADENGYTPIHAAVSYGHSDLLKILVER 59
Score = 28.3 bits (60), Expect = 3.6
Identities = 14/38 (36%), Positives = 20/38 (52%)
Query: 105 GATALWCASGAGHLAIVKRLVKAGADVNHATRTVSTPL 142
G T + A GH ++K LV+ G D+N + TPL
Sbjct: 37 GYTPIHAAVSYGHSDLLKILVERGGDINIRDQDGETPL 74
>SPAC13D6.04c |btb3||BTB/POZ domain protein Btb3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 523
Score = 39.1 bits (87), Expect = 0.002
Identities = 22/68 (32%), Positives = 41/68 (60%), Gaps = 1/68 (1%)
Query: 145 ACFEGRLDIVKYLVR-HGADIHKANKYNNTCLMIAAYKGYLDVVQFLLDSGARVDDRALC 203
AC G L++VK LV + I++ ++++ + L++A+ G+ VV+FLL++GA +
Sbjct: 59 ACRRGDLEVVKSLVENYNTPINQVDQFDYSPLVLASLCGHEPVVKFLLENGALCERDTFQ 118
Query: 204 GATALHFA 211
G L+ A
Sbjct: 119 GERCLYGA 126
Score = 27.9 bits (59), Expect = 4.8
Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
Query: 116 GHLAIVKRLVKA-GADVNHATRTVSTPLRAACFEGRLDIVKYLVRHGADIHKANKYNNTC 174
G L +VK LV+ +N + +PL A G +VK+L+ +GA + C
Sbjct: 63 GDLEVVKSLVENYNTPINQVDQFDYSPLVLASLCGHEPVVKFLLENGALCERDTFQGERC 122
Query: 175 L 175
L
Sbjct: 123 L 123
>SPBP16F5.05c |||ribosome biogenesis protein
Nop8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 146
Score = 39.1 bits (87), Expect = 0.002
Identities = 24/90 (26%), Positives = 41/90 (45%), Gaps = 2/90 (2%)
Query: 105 GATALWCASGAGHLAIVKRLVK--AGADVNHATRTVSTPLRAACFEGRLDIVKYLVRHGA 162
G + L AS GH+A+V++++ +N + +T + A G +I K L+ G
Sbjct: 36 GNSGLHMASANGHIAVVQKIIPYLNKEVINAQNESGNTAMHWAALNGHAEICKLLLEAGG 95
Query: 163 DIHKANKYNNTCLMIAAYKGYLDVVQFLLD 192
D H N Y + + A + V+ LD
Sbjct: 96 DPHIKNIYEKSPIYEADIRNQQKVMDLFLD 125
Score = 31.9 bits (69), Expect = 0.29
Identities = 24/95 (25%), Positives = 51/95 (53%), Gaps = 3/95 (3%)
Query: 163 DIHKANKYNNTCLMIAAYKGYLDVVQFLLD--SGARVDDRALCGATALHFAAECGHAAVV 220
++ + ++ N+ L +A+ G++ VVQ ++ + ++ + G TA+H+AA GHA +
Sbjct: 28 ELSRRDENGNSGLHMASANGHIAVVQKIIPYLNKEVINAQNESGNTAMHWAALNGHAEIC 87
Query: 221 CSLLDHGA-KMLTNENGMTPLQCAAERARASVVEI 254
LL+ G + N +P+ A R + V+++
Sbjct: 88 KLLLEAGGDPHIKNIYEKSPIYEADIRNQQKVMDL 122
>SPAC22F3.09c |res2|mcs1, pct1|MBF transcription factor complex
subunit Res2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 657
Score = 37.1 bits (82), Expect = 0.008
Identities = 25/83 (30%), Positives = 37/83 (44%), Gaps = 8/83 (9%)
Query: 71 HGREGAVRILLEKFRPPVCLETEGTVKFDEYVIEGATALWCASGAGHLAIVKRLVKAGAD 130
H EG + L + PP + + D G T+L A GH+ ++K L++A AD
Sbjct: 221 HPEEGRIPSFL--YSPPPDFQVNSVIDDD-----GHTSLHWACSMGHIEMIKLLLRANAD 273
Query: 131 VNHATRTVSTPL-RAACFEGRLD 152
+ R TPL R+ F D
Sbjct: 274 IGVCNRLSQTPLMRSVIFTNNYD 296
Score = 31.9 bits (69), Expect = 0.29
Identities = 15/37 (40%), Positives = 22/37 (59%)
Query: 140 TPLRAACFEGRLDIVKYLVRHGADIHKANKYNNTCLM 176
T L AC G ++++K L+R ADI N+ + T LM
Sbjct: 250 TSLHWACSMGHIEMIKLLLRANADIGVCNRLSQTPLM 286
>SPBC2F12.05c |||sterol binding ankyrin repeat
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1310
Score = 33.5 bits (73), Expect = 0.096
Identities = 22/83 (26%), Positives = 39/83 (46%), Gaps = 2/83 (2%)
Query: 108 ALWCASGAGHLAIVKRLVKA-GADVNHATRTVSTPLRAACFEGRLDIVKYLVRH-GADIH 165
AL+ + ++ +VK ++ DVN + +TPL A GR DIV+ L+ H + +
Sbjct: 58 ALFISIQCANVQMVKHILSVFDVDVNAYDKNKNTPLHLAAMAGRQDIVEALLLHPDINYN 117
Query: 166 KANKYNNTCLMIAAYKGYLDVVQ 188
N N +A +D ++
Sbjct: 118 LVNANNKKAYQVATSPQLMDFMK 140
Score = 27.1 bits (57), Expect = 8.3
Identities = 19/67 (28%), Positives = 35/67 (52%), Gaps = 6/67 (8%)
Query: 135 TRTVSTPLRAACFEGRLDIVKYLVRHGA-----DIHKAN-KYNNTCLMIAAYKGYLDVVQ 188
T+ + + A E L+ + YL+RH D+++ + K T L +A ++V+
Sbjct: 147 TKETAREFKKAFKERNLESMDYLMRHNEFNDAIDLNEVDIKTGQTYLHVATKAKDAELVK 206
Query: 189 FLLDSGA 195
+LLD+GA
Sbjct: 207 WLLDNGA 213
>SPCC1827.04 |||ankyrin repeat protein, unknown biological
role|Schizosaccharomyces pombe|chr 3|||Manual
Length = 600
Score = 30.3 bits (65), Expect = 0.90
Identities = 20/58 (34%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
Query: 205 ATALHFAAECGHAAVVCSLLDHGA-KMLTNENGMTPLQCAAERARASVVEILAARPEV 261
+T LH+A +A +V LL +GA + N NG TP + + E L AR E+
Sbjct: 434 STPLHYAVTQKNAKLVAKLLRNGADPAMLNGNGKTPFEISTGNKEVK-DEFLIARHEL 490
>SPBC365.12c |ish1||LEA domain protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 684
Score = 29.5 bits (63), Expect = 1.6
Identities = 24/86 (27%), Positives = 39/86 (45%), Gaps = 10/86 (11%)
Query: 293 LHRAMAMRYDPRYGEML--KRPSTPIPAYDNWKETTTLEEVERLQGDAHGLHMEGLTVRE 350
++RA+A + D + + K P +P YD+W L+ + GD+ G E
Sbjct: 545 IYRAIAEKADKSVLQSIQSKFPKATVPGYDSW-SNEDLKSALKEYGDSIGKVFNRKDAIE 603
Query: 351 RVLGAACPDLPHPIVFRGAVFADEAR 376
R+ H I+F G V AD+A+
Sbjct: 604 RL-------KRHDILFYGPVVADKAK 622
>SPBC31F10.11c |cwf4|syf3|complexed with Cdc5 protein Cwf4
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 674
Score = 29.5 bits (63), Expect = 1.6
Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Query: 341 LHMEGLTVRERVLGAACPDLPHPIVFRGAVFADEA--RFDRCLALW 384
L + V + LG A P P +FRG + ++A +FDRC L+
Sbjct: 412 LRQRKIDVARKTLGRALGMCPKPKLFRGYIEFEDAIKQFDRCRILY 457
>SPAC22H10.03c |kap114||karyopherin Kap14|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 986
Score = 28.3 bits (60), Expect = 3.6
Identities = 22/87 (25%), Positives = 36/87 (41%), Gaps = 1/87 (1%)
Query: 2 EREDNDRLVLFNELAN-SLRERVFFAARDGMSLTLYALLYEKKTDEIDDLLNIDVCSDGV 60
E N L + +EL + SL E FF ++ LY ++ ++ +L
Sbjct: 142 ENSINASLDVLDELVDESLVEEQFFIIAPQLASILYQFIFSAPPNDSMRMLQARGIKLFR 201
Query: 61 KCTPLITAARHGREGAVRILLEKFRPP 87
C LI + + VR+ LE+ PP
Sbjct: 202 SCLELIEIYKETKAEHVRVFLEQILPP 228
>SPBC1A4.07c |||U3 snoRNP-associated protein
Sof1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 436
Score = 27.5 bits (58), Expect = 6.3
Identities = 21/93 (22%), Positives = 40/93 (43%), Gaps = 3/93 (3%)
Query: 472 AGRLLEDSGNCERWLSQGTRSAARRAVFAMRGARVR-SGQTLLHLAADRNTPVDDFHTSD 530
A +L + S CERW S+ R VF+ +G + + +++ ++ V + D
Sbjct: 88 AVKLWDASERCERWTSKAHEGIVRGLVFSNQGDVLSCASDRYVYMLNKQDGKVKRSYLGD 147
Query: 531 --VCQFPCARTSRLLLDCGADVDAADMNRRTPL 561
+ ++ L G +V D +R TP+
Sbjct: 148 SSLLDIDTSKGGDLFATSGENVSIWDYSRDTPV 180
>SPBC691.03c |apl3||AP-2 adaptor complex subunit Alp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 878
Score = 27.5 bits (58), Expect = 6.3
Identities = 14/48 (29%), Positives = 24/48 (50%), Gaps = 3/48 (6%)
Query: 240 LQCAAERARASVVEILAARPE---VTRAEAIEAYELLGASFANDKEYY 284
+ C E A+ V ++L P VT+ + I ++ +FA D E+Y
Sbjct: 384 MMCDEENAKLIVADLLQYLPHLDSVTQEDLISKVAIISETFATDYEWY 431
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.323 0.137 0.412
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,890,144
Number of Sequences: 5004
Number of extensions: 116042
Number of successful extensions: 424
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 370
Number of HSP's gapped (non-prelim): 51
length of query: 664
length of database: 2,362,478
effective HSP length: 77
effective length of query: 587
effective length of database: 1,977,170
effective search space: 1160598790
effective search space used: 1160598790
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.5 bits)
S2: 57 (27.1 bits)
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