GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001984-TA|BGIBMGA001984-PA|IPR001130|TatD-related
deoxyribonuclease, IPR012278|Mg-dependent DNase, TatD
         (251 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY052622-1|AAL15470.1|  290|Tribolium castaneum kynurenine 3-mon...    22   5.2  
AY052393-1|AAL15467.1|  445|Tribolium castaneum kynurenine 3-mon...    22   5.2  
AY052391-1|AAL15465.1|  445|Tribolium castaneum kynurenine 3-mon...    22   5.2  
AJ307577-1|CAC84070.1|  301|Tribolium castaneum dachshund protein.     22   5.2  

>AY052622-1|AAL15470.1|  290|Tribolium castaneum kynurenine
          3-monooxygenase protein.
          Length = 290

 Score = 21.8 bits (44), Expect = 5.2
 Identities = 9/25 (36%), Positives = 16/25 (64%)

Query: 25 TSGINKIIVTGGSLEDSKKAIELSR 49
          ++ +N +IV GG L  S  AI +++
Sbjct: 3  SNNVNSVIVVGGGLVGSLCAIFMAK 27


>AY052393-1|AAL15467.1|  445|Tribolium castaneum kynurenine
          3-monooxygenase protein.
          Length = 445

 Score = 21.8 bits (44), Expect = 5.2
 Identities = 9/25 (36%), Positives = 16/25 (64%)

Query: 25 TSGINKIIVTGGSLEDSKKAIELSR 49
          ++ +N +IV GG L  S  AI +++
Sbjct: 3  SNNVNSVIVVGGGLVGSLCAIFMAK 27


>AY052391-1|AAL15465.1|  445|Tribolium castaneum kynurenine
          3-monooxygenase protein.
          Length = 445

 Score = 21.8 bits (44), Expect = 5.2
 Identities = 9/25 (36%), Positives = 16/25 (64%)

Query: 25 TSGINKIIVTGGSLEDSKKAIELSR 49
          ++ +N +IV GG L  S  AI +++
Sbjct: 3  SNNVNSVIVVGGGLVGSLCAIFMAK 27


>AJ307577-1|CAC84070.1|  301|Tribolium castaneum dachshund protein.
          Length = 301

 Score = 21.8 bits (44), Expect = 5.2
 Identities = 7/19 (36%), Positives = 15/19 (78%)

Query: 132 HCRAAADDLIEIISRNRDK 150
           +CRAA +D+++ + R R++
Sbjct: 165 NCRAAYEDIVKHLERLREE 183


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.318    0.138    0.413 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 59,132
Number of Sequences: 317
Number of extensions: 2364
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of query: 251
length of database: 114,650
effective HSP length: 55
effective length of query: 196
effective length of database: 97,215
effective search space: 19054140
effective search space used: 19054140
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 42 (21.0 bits)