GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001984-TA|BGIBMGA001984-PA|IPR001130|TatD-related
deoxyribonuclease, IPR012278|Mg-dependent DNase, TatD
         (251 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC17A3.08 |||TatD|Schizosaccharomyces pombe|chr 2|||Manual          212   4e-56
SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S...    27   3.4  
SPAC2F3.06c |kap104||karyopherin Kap104|Schizosaccharomyces pomb...    26   6.0  
SPAC1399.03 |fur4||uracil permease|Schizosaccharomyces pombe|chr...    25   7.9  

>SPBC17A3.08 |||TatD|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 312

 Score =  212 bits (518), Expect = 4e-56
 Identities = 105/258 (40%), Positives = 169/258 (65%), Gaps = 12/258 (4%)

Query: 1   MYKGEYNGSRKHDPDLDVVLERAWTSGINKIIVTGGSLEDSKKAIELSRTDSKLFT-TVG 59
           +++G Y+   KH  D D ++ RA   G+ K+++TG ++E+S++A+ L+ T+ + FT TVG
Sbjct: 25  VFRGIYHEKLKHPDDFDSIISRAKAVGVEKMMITGDNVENSEEALNLA-TNYECFTSTVG 83

Query: 60  CHPTRCSEFLSN---PDDYLQGLRDLISGNK--DKVVAIGECGLDYERFHFCEKEVQLKF 114
            HP +   FL +   P+DYL  L  L +  K   KVVA GE GLDY+R H+   +VQ  +
Sbjct: 84  VHPCQAQCFLRHSEGPEDYLVKLEALANKGKASGKVVAFGEFGLDYDRLHYAPADVQKMY 143

Query: 115 FEKQLPLSLEYNLPLFLHCRAAADDLIEIISRNRDKIIG-GVVHSFDGSEQDLQKILELG 173
           FE+QL +++   LPLFLH R A +D   I+ +   ++   GVVHSF GS  ++++ +E G
Sbjct: 144 FEEQLKVAVRVQLPLFLHSRNAENDFFAILEKYLPELPKKGVVHSFTGSIDEMRRCIEHG 203

Query: 174 LSIGINGCSLRSKENIEVASKMPRDKLMIETDCPWCEIKPTHPGYCHVNTK--FETVKKT 231
           L +G+NGCSL+++EN+EV   +P +K+++ETD PWCE++P+H G+  + TK  F++ KK 
Sbjct: 204 LYVGVNGCSLKTEENLEVVRAIPLEKMLLETDAPWCEVRPSHAGHQFLKTKLPFDSCKKE 263

Query: 232 KYSLQRNAQVKGRNEPVN 249
           ++  +    ++GRNEP N
Sbjct: 264 RF--KEGCMIRGRNEPCN 279


>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
           Mok11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2397

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 16/60 (26%), Positives = 26/60 (43%)

Query: 72  PDDYLQGLRDLISGNKDKVVAIGECGLDYERFHFCEKEVQLKFFEKQLPLSLEYNLPLFL 131
           P + +  L    S N   +   GE  LD   FH+    + L+F      + + Y+LP+ L
Sbjct: 364 PANLIDALNATSSDNVYFLREEGENALDASAFHYSVYRIILRFLRMDGLMEIPYDLPVDL 423


>SPAC2F3.06c |kap104||karyopherin Kap104|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 910

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 14/42 (33%), Positives = 22/42 (52%)

Query: 120 PLSLEYNLPLFLHCRAAADDLIEIISRNRDKIIGGVVHSFDG 161
           P +L Y LP+F+ C A  ++    +     KI+ G V  F+G
Sbjct: 849 PQALSYLLPMFVLCVAEYENPSAELRDMFQKILQGSVELFNG 890


>SPAC1399.03 |fur4||uracil permease|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 581

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 22/67 (32%), Positives = 27/67 (40%), Gaps = 2/67 (2%)

Query: 53  KLFTTVGCHPTRCSEFLSNPDDYLQGLRDLISGNKDKVVAIGECGLDYERFHFCEKEVQL 112
           K+F    C     SE     DDYL  L    S +KD    I   GL  E+    EK+  L
Sbjct: 512 KIFPVTECGEKMLSEVPEEADDYLLTLASEDSIDKDSTSEIYIDGLPTEK--EVEKDDVL 569

Query: 113 KFFEKQL 119
               K+L
Sbjct: 570 SITSKKL 576


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.138    0.413 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,201,388
Number of Sequences: 5004
Number of extensions: 51141
Number of successful extensions: 129
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 124
Number of HSP's gapped (non-prelim): 4
length of query: 251
length of database: 2,362,478
effective HSP length: 71
effective length of query: 180
effective length of database: 2,007,194
effective search space: 361294920
effective search space used: 361294920
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 53 (25.4 bits)