Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001984-TA|BGIBMGA001984-PA|IPR001130|TatD-related
deoxyribonuclease, IPR012278|Mg-dependent DNase, TatD
(251 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0412 + 3151059-3151090,3151374-3151833,3151899-3151979,315... 178 4e-45
07_01_0409 + 3143838-3144017,3144345-3144461,3144659-3144739,314... 101 6e-22
04_04_0886 - 29089083-29089211,29089702-29089890,29089968-290901... 63 2e-10
08_02_1236 + 25454371-25456801,25456891-25457177,25457258-254574... 31 0.67
04_04_1619 - 34825922-34825998,34826109-34826200,34827281-348273... 31 1.2
04_04_1617 - 34815889-34816080,34816185-34816412,34816591-348168... 31 1.2
10_04_0022 + 7687383-7687670,7688479-7688556,7689456-7689535,768... 30 1.6
08_02_1608 - 28205483-28205851,28206244-28206522 29 3.6
11_06_0669 - 26084906-26087350 29 4.7
11_06_0226 + 21461174-21462018,21462508-21464439,21464746-21464845 28 6.3
11_06_0228 + 21497248-21498143,21499831-21501700,21501934-215020... 28 8.3
>07_01_0412 +
3151059-3151090,3151374-3151833,3151899-3151979,
3152682-3152752,3152827-3152937,3153149-3153231,
3153489-3153705,3154169-3154252,3154423-3154498
Length = 404
Score = 178 bits (433), Expect = 4e-45
Identities = 87/180 (48%), Positives = 119/180 (66%), Gaps = 5/180 (2%)
Query: 71 NPDDYLQGLRDLISGN--KDKVVAIGECGLDYERFHFCEKEVQLKFFEKQLPLSLEYNLP 128
+P+ + Q L L K KVVA+GECGLDY+R HFC +VQ K+F+KQ L+ LP
Sbjct: 171 DPEGHFQALLALAKEGIAKGKVVAVGECGLDYDRLHFCPSDVQKKYFKKQFELAEAVKLP 230
Query: 129 LFLHCRAAADDLIEIISRNRDKIIGGVVHSFDGSEQDLQKILEL-GLSIGINGCSLRSKE 187
+FLH RAA +D EI+S N + GGV HSF G+ +D K+L + IGINGCSL++ E
Sbjct: 231 MFLHMRAAGEDFCEIVSENLYRFPGGVTHSFTGTAEDRDKLLSFEKMFIGINGCSLKTSE 290
Query: 188 NIEVASKMPRDKLMIETDCPWCEIKPTHPGYCHVNTKFETVKKTKYSLQRNAQVKGRNEP 247
N+EV +P +++MIETD P+C+IK TH G V + + + KK KY + ++ VKGRNEP
Sbjct: 291 NLEVLQGIPAERMMIETDSPYCDIKNTHAGIKFVKSVWPSKKKEKY--EPDSTVKGRNEP 348
Score = 36.3 bits (80), Expect = 0.024
Identities = 14/31 (45%), Positives = 22/31 (70%)
Query: 3 KGEYNGSRKHDPDLDVVLERAWTSGINKIIV 33
+G Y+G + H D+ VL RAW +G+++IIV
Sbjct: 11 EGIYHGKQCHAADIPAVLARAWAAGVDRIIV 41
Score = 32.3 bits (70), Expect = 0.39
Identities = 17/39 (43%), Positives = 28/39 (71%), Gaps = 4/39 (10%)
Query: 16 LDVVLERAWTSGINKIIVTGGSLEDSKKAIELSRTDSKL 54
L+++L W SG VTGGSL++S++A+E++ TD +L
Sbjct: 69 LNLLLSLVW-SGRK---VTGGSLKESREALEIAETDGEL 103
>07_01_0409 +
3143838-3144017,3144345-3144461,3144659-3144739,
3145335-3145405,3145479-3145589,3146194-3146382,
3146643-3146670
Length = 258
Score = 101 bits (242), Expect = 6e-22
Identities = 54/128 (42%), Positives = 76/128 (59%), Gaps = 17/128 (13%)
Query: 33 VTGGSLEDSKKAIELSRTDSKLFTTVGCHPTRCSEFL-----------SNPDDYLQGLRD 81
VTGGSL++S++A+E++ TD +L C C +++ +P + Q L
Sbjct: 61 VTGGSLKESREALEIAETDGEL----SCFDAACFDYVLLGAFKEFEESGDPKGHFQALLA 116
Query: 82 LISGN--KDKVVAIGECGLDYERFHFCEKEVQLKFFEKQLPLSLEYNLPLFLHCRAAADD 139
L K KVVA+GECGLDY+R HFC +VQ K+F+KQ L+ LP+FLH RAA +D
Sbjct: 117 LAKEGIAKGKVVAVGECGLDYDRLHFCPSDVQKKYFKKQFELAEAVKLPMFLHMRAAGED 176
Query: 140 LIEIISRN 147
EI+S N
Sbjct: 177 FCEIVSEN 184
Score = 58.0 bits (134), Expect = 7e-09
Identities = 28/60 (46%), Positives = 40/60 (66%), Gaps = 2/60 (3%)
Query: 187 ENIEVASKMPRDKLMIETDCPWCEIKPTHPGYCHVNTKFETVKKTKYSLQRNAQVKGRNE 246
EN EV +P +++MIETD P+C+IK TH G V + + + KK KY + ++ VKGRNE
Sbjct: 188 ENFEVLQGIPAERMMIETDSPYCDIKNTHAGIKLVKSVWPSKKKEKY--EPDSTVKGRNE 245
>04_04_0886 -
29089083-29089211,29089702-29089890,29089968-29090121,
29090389-29090489,29090970-29091020,29092606-29092761
Length = 259
Score = 63.3 bits (147), Expect = 2e-10
Identities = 32/99 (32%), Positives = 58/99 (58%), Gaps = 2/99 (2%)
Query: 111 QLKFFEKQLPLSLEYNLPLFLHCRAAADDLIEIISRNRDKIIGGVVHSFDGSEQDLQKIL 170
Q++ F++QL L+ E N P+ +HC A DL+EI+ R G ++HS+ GS + + +
Sbjct: 69 QVEVFQQQLELAKELNKPVSVHCVRAFGDLLEILKRTGPFPAGVLLHSYLGSAEMVSSLE 128
Query: 171 ELGLSIGING--CSLRSKENIEVASKMPRDKLMIETDCP 207
LG ++G ++S + ++ MP D++++ETD P
Sbjct: 129 ILGCYFSLSGFLTGMKSTKAKKMLKSMPLDRILLETDAP 167
>08_02_1236 +
25454371-25456801,25456891-25457177,25457258-25457416,
25457561-25457740,25457823-25458017,25459059-25459157,
25459508-25460137,25460250-25460591
Length = 1440
Score = 31.5 bits (68), Expect = 0.67
Identities = 28/87 (32%), Positives = 46/87 (52%), Gaps = 10/87 (11%)
Query: 13 DPDLDVVLERAWTSGINKIIVTGGSLEDSKKAIELSRTDSKLFTTVGCHPTRCSEFLSNP 72
D + + LE A+TSGI++ +T G ++++ + S + T + T+ +N
Sbjct: 550 DDNREDALEDAFTSGIDEAAITSG-VDEAAMEADASTVEKNDDTAIDGTETKEKHEKTN- 607
Query: 73 DDYLQGLRDLISGNKDKVVAIGECGLD 99
DD LQGL DL +KD V ECG++
Sbjct: 608 DDILQGL-DL---SKDNV----ECGVN 626
>04_04_1619 -
34825922-34825998,34826109-34826200,34827281-34827399,
34827507-34827734,34827904-34828164,34828258-34828614,
34828803-34828916,34828990-34829063,34829176-34829359,
34829685-34829830,34829951-34830309,34835569-34835789
Length = 743
Score = 30.7 bits (66), Expect = 1.2
Identities = 24/77 (31%), Positives = 40/77 (51%), Gaps = 8/77 (10%)
Query: 2 YKGEYNGSRKHDPDLDVVLERAWTSGINKIIVTGGSLEDSKKAIELSRTDSKLFTTVGCH 61
YKG GSR DPDL + R W + N++ +G ++D+K ++ D+K + C
Sbjct: 81 YKGNICGSRHGDPDLHELDVRYWMNP-NQVYQSG--VKDNK----INLADAKAICLMEC- 132
Query: 62 PTRCSEFLSNPDDYLQG 78
P ++ L+ DY +G
Sbjct: 133 PIPAADGLNFVCDYPEG 149
>04_04_1617 -
34815889-34816080,34816185-34816412,34816591-34816851,
34816943-34817299,34817466-34817579,34817653-34817726,
34817839-34818022,34818349-34818494,34818628-34818986,
34819912-34820132
Length = 711
Score = 30.7 bits (66), Expect = 1.2
Identities = 24/77 (31%), Positives = 40/77 (51%), Gaps = 8/77 (10%)
Query: 2 YKGEYNGSRKHDPDLDVVLERAWTSGINKIIVTGGSLEDSKKAIELSRTDSKLFTTVGCH 61
YKG GSR DPDL + R W + N++ +G ++D+K ++ D+K + C
Sbjct: 81 YKGNICGSRHGDPDLHELDVRYWMNP-NQVYQSG--VKDNK----INLADAKAICLMEC- 132
Query: 62 PTRCSEFLSNPDDYLQG 78
P ++ L+ DY +G
Sbjct: 133 PMPAADGLNFVCDYPEG 149
>10_04_0022 +
7687383-7687670,7688479-7688556,7689456-7689535,
7689876-7690095,7690444-7690677
Length = 299
Score = 30.3 bits (65), Expect = 1.6
Identities = 22/97 (22%), Positives = 44/97 (45%), Gaps = 3/97 (3%)
Query: 107 EKEVQLKFFEKQLPLSLEYNLPLFLHCRAAADDLIEIISRNRDKIIGGVVHSFDGSEQDL 166
+KE +LK E++L +E ++ + R ++D+ I R ++ G+ FD + L
Sbjct: 151 QKEAELKLLEEELARRVEESIRKNVEDRLNSEDIKNEIKR---RVEEGIKQLFDEVDAQL 207
Query: 167 QKILELGLSIGINGCSLRSKENIEVASKMPRDKLMIE 203
QK E L + +E E+ + ++ +E
Sbjct: 208 QKEKETALREARHKAEQERREREELDRMLEENRRKVE 244
>08_02_1608 - 28205483-28205851,28206244-28206522
Length = 215
Score = 29.1 bits (62), Expect = 3.6
Identities = 25/69 (36%), Positives = 33/69 (47%), Gaps = 6/69 (8%)
Query: 126 NLPLFLHCRAAADDLIEIISRNRDKIIGGVVHSFDGSEQ--DLQKILE---LGLSIGI-N 179
+LP+ C AA E +R RD I G V H F +Q LQ LE + G +
Sbjct: 55 HLPVSDRCEAAVTMSYEAQARLRDPIYGCVAHIFSLQQQVVSLQAQLESLKAQATQGYGD 114
Query: 180 GCSLRSKEN 188
GCS+ S +N
Sbjct: 115 GCSISSPQN 123
>11_06_0669 - 26084906-26087350
Length = 814
Score = 28.7 bits (61), Expect = 4.7
Identities = 21/72 (29%), Positives = 34/72 (47%), Gaps = 2/72 (2%)
Query: 113 KFFEKQLPLSLEYNLPLFLHCRAAADDLIEIISRNRDKII-GGVVHSFDGSEQDLQKILE 171
K F K L + + P F L + +SR R ++ V ++ D S+++LQKIL
Sbjct: 141 KIFSKMLEEATGNSCPQFNSLNTLEQKLEQALSRKRFLLVLDDVWYNKDDSQEELQKIL- 199
Query: 172 LGLSIGINGCSL 183
L +G G +
Sbjct: 200 FPLKVGALGSKI 211
>11_06_0226 + 21461174-21462018,21462508-21464439,21464746-21464845
Length = 958
Score = 28.3 bits (60), Expect = 6.3
Identities = 19/67 (28%), Positives = 31/67 (46%), Gaps = 3/67 (4%)
Query: 76 LQGLRDLISGNKDKVV-AIGECGLDYERFHFCEKEVQLKFFEKQLPLSLEYNLPLF-LHC 133
+ LR LI + ++ +G GL + FCE + L F + +P+ E L+
Sbjct: 809 MPALRTLILRTRQRISWTVGGTGL-FPNLRFCEMNIALTFLQGAMPMLTELQFELWAAED 867
Query: 134 RAAADDL 140
AAA D+
Sbjct: 868 GAAAGDV 874
>11_06_0228 +
21497248-21498143,21499831-21501700,21501934-21502038,
21502139-21502232,21502335-21502363
Length = 997
Score = 27.9 bits (59), Expect = 8.3
Identities = 16/62 (25%), Positives = 30/62 (48%), Gaps = 3/62 (4%)
Query: 93 IGECGLDYERFHFCEKEVQLKFFEKQLPLSLEYNLPLFL--HCRAAADDLIEIISRNRDK 150
+G GL + FC ++ L F + +P+ + L L+ +C A L ++ NR +
Sbjct: 841 VGGAGL-FPNLRFCRMDIALAFLQGAMPMLTQIELYLWASEYCAATDVGLGHLLLLNRVE 899
Query: 151 II 152
+I
Sbjct: 900 VI 901
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.138 0.413
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,613,325
Number of Sequences: 37544
Number of extensions: 319680
Number of successful extensions: 616
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 606
Number of HSP's gapped (non-prelim): 14
length of query: 251
length of database: 14,793,348
effective HSP length: 80
effective length of query: 171
effective length of database: 11,789,828
effective search space: 2016060588
effective search space used: 2016060588
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 59 (27.9 bits)
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