GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001984-TA|BGIBMGA001984-PA|IPR001130|TatD-related
deoxyribonuclease, IPR012278|Mg-dependent DNase, TatD
         (251 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_41149| Best HMM Match : No HMM Matches (HMM E-Value=.)             105   3e-23
SB_58955| Best HMM Match : No HMM Matches (HMM E-Value=.)              82   5e-16
SB_4024| Best HMM Match : TatD_DNase (HMM E-Value=0)                   80   2e-15
SB_56494| Best HMM Match : No HMM Matches (HMM E-Value=.)              58   7e-09
SB_31796| Best HMM Match : SAP (HMM E-Value=3.5e-10)                   30   2.1  
SB_38754| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.8  
SB_10762| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.8  
SB_4139| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   2.8  
SB_36237| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.7  
SB_49896| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.8  
SB_4796| Best HMM Match : Arfaptin (HMM E-Value=3.5e-16)               28   6.4  
SB_26290| Best HMM Match : zf-C2H2 (HMM E-Value=5.5e-08)               28   6.4  
SB_20771| Best HMM Match : Popeye (HMM E-Value=6.4)                    28   8.5  
SB_33374| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.5  

>SB_41149| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 435

 Score =  105 bits (252), Expect = 3e-23
 Identities = 67/207 (32%), Positives = 117/207 (56%), Gaps = 18/207 (8%)

Query: 15  DLDVVLERAWTSGINKIIVTGGSLEDSKKAIELSRTD-SKLFTTVGCHPTRCSEFLSNPD 73
           DLD V++RA  +GI K+I+TG ++     A+ L+R     +F  VG HP    +  +  D
Sbjct: 162 DLDFVVDRATNAGIKKMILTGNTIRMCHNAVTLARDHPGVIFGGVGIHPHFVEKEWN--D 219

Query: 74  DYLQGLRDLISGNKDKVVAIGECGLDYERFHFCEKEVQLKFFEKQLPLSLEYNLPLFLHC 133
           D  + +R +IS    +V+A+GE GLD+ R ++ +KEVQ++ FEKQ+ L+ E+  PL  H 
Sbjct: 220 DTYEVMRGMIS--LPEVIAVGEVGLDFYR-NYSKKEVQIEAFEKQVELACEFQKPLLAHE 276

Query: 134 RAAADDLIEIISRNRDKIIGGVVHSFDGSEQDLQKILELGLSIGING----CSLRSKENI 189
           R++    +E++S    ++   V+H F G++ ++   + +G  IGI G     +L S   +
Sbjct: 277 RSSHIKFVEVLSNFSGRLPPIVIHCFTGTKAEMIAYIAMGFYIGITGYICKANLISPPYL 336

Query: 190 EVASK--------MPRDKLMIETDCPW 208
           + A K         P D++++E+D P+
Sbjct: 337 DTAGKNLREAIIDCPLDRILLESDAPY 363


>SB_58955| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 188

 Score = 81.8 bits (193), Expect = 5e-16
 Identities = 36/91 (39%), Positives = 63/91 (69%), Gaps = 3/91 (3%)

Query: 161 GSEQDLQKILELGLSIGINGCSLRSKENIEVASKMPRDKLMIETDCPWCEIKPTHPGYCH 220
           G+++ + ++L +     ++  SL++++NI+V   +P D+L+IETD PWCEI+PTH G+ +
Sbjct: 101 GTDEGVSEVLHVAGEKRLHR-SLKTQDNIDVMKTIPSDRLLIETDAPWCEIRPTHAGFKY 159

Query: 221 VNTKFETVKKTKYSLQRNAQVKGRNEPVNIV 251
           + TKF+  KK ++  ++   VK RNEP +IV
Sbjct: 160 IQTKFDCKKKERW--EKGFCVKSRNEPAHIV 188



 Score = 72.9 bits (171), Expect = 2e-13
 Identities = 36/71 (50%), Positives = 49/71 (69%), Gaps = 9/71 (12%)

Query: 31 IIVTGGSLEDSKKAIELSRTDSKLFTTVGCHPTRCSEFLS---NPDDYLQGLRDLISGNK 87
          +I+T G+  +S+KA++L++        VGCHPTRC+EF S   NPD+YL  L  L   NK
Sbjct: 1  MIITSGNYSESEKALKLAKEQ------VGCHPTRCTEFESKGSNPDEYLNKLLSLAQDNK 54

Query: 88 DKVVAIGECGL 98
          +KVVA+GECGL
Sbjct: 55 EKVVAVGECGL 65


>SB_4024| Best HMM Match : TatD_DNase (HMM E-Value=0)
          Length = 236

 Score = 79.8 bits (188), Expect = 2e-15
 Identities = 50/165 (30%), Positives = 82/165 (49%), Gaps = 13/165 (7%)

Query: 50  TDSKLFTTVGCHPTRCSEFLSNPDDYLQGLRDLISG--NKDKVVAIGECGLDYERFHFCE 107
           T+  ++   GCHP        N D Y + +   I       K VA+GECGLDY +    +
Sbjct: 41  TEDGVWGAFGCHP-------HNSDYYTETMESKIIECLKHPKAVALGECGLDYSKRSKAQ 93

Query: 108 KEVQLKFFEKQLPLSLEYNLPLFLHCRAAADDLIEIISRNRDKIIGGVVHSFDGSEQDLQ 167
              Q + F +Q+ L++E   PL +HCR A  D ++++  +        +H + GS    Q
Sbjct: 94  PSKQAEVFVRQMKLAVELKKPLIIHCRNAESDTLDLLKSSMPTDWKIHLHCYTGSVDFAQ 153

Query: 168 KILE--LGLSIGING--CSLRSKENIEVASKMPRDKLMIETDCPW 208
           K L     L IG+ G   S  +++   +A ++P D+L++ETD P+
Sbjct: 154 KFLHQFSNLYIGLTGIVTSSNARDVQNLARQIPLDRLLLETDAPY 198


>SB_56494| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 162

 Score = 58.0 bits (134), Expect = 7e-09
 Identities = 39/134 (29%), Positives = 71/134 (52%), Gaps = 6/134 (4%)

Query: 58  VGCHPTRC-SEFLSNPDDYLQGLRDLISGNKDKVVAIGECGLDYE-RFHFCEKE--VQLK 113
           +G HP +  +   S     L+G+ D+I  N  K+ A+GE GLD+  RF   +K+  +Q +
Sbjct: 31  LGIHPVQSLNPERSVTHSDLEGVEDIIRQNHHKLFAVGEIGLDFTPRFIKSDKDKGIQKE 90

Query: 114 FFEKQLPLSLEYNLPLFLHCRAAADDLIEIISRNRDKIIGGVVHSFDGSEQDLQKILELG 173
            F +Q+ L+ E +LP+ +H R+A   +I+I+       +  ++H+FDG      +  + G
Sbjct: 91  VFVRQIKLAQELDLPVNVHSRSAGRHVIQILKEQGASRV--LLHAFDGRASVALQGAQAG 148

Query: 174 LSIGINGCSLRSKE 187
               I    +RS++
Sbjct: 149 FFFSIPPSIVRSEQ 162


>SB_31796| Best HMM Match : SAP (HMM E-Value=3.5e-10)
          Length = 1029

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 25/86 (29%), Positives = 41/86 (47%), Gaps = 6/86 (6%)

Query: 157 HSFDGSEQDLQKILELGLSIGINGCSLRSKENIEVASKMPRDKLMIETDCPWCEIKPTHP 216
           HS   SEQDL++I     S+   G S +S ++ +V S  P    M+ T            
Sbjct: 600 HSPSHSEQDLRQIESTDFSM---GWSPKSHQSQDVPS--PNSTFMVTTQADAQARLLDGA 654

Query: 217 GYCHVNTKFETVKKTKYSLQRNAQVK 242
           G+ H   K E+++++ YS    +QV+
Sbjct: 655 GFMHAKPKMESMQRS-YSNSERSQVE 679


>SB_38754| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 205

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 2/30 (6%)

Query: 10  RKHDPDL--DVVLERAWTSGINKIIVTGGS 37
           +KHDPD     + +R WT G   + VTGG+
Sbjct: 110 KKHDPDFASTSIEDRKWTFGRCNVFVTGGN 139


>SB_10762| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 647

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 22/111 (19%), Positives = 52/111 (46%), Gaps = 2/111 (1%)

Query: 10  RKHDPDLDVVLERAWTSGINKIIVTGGSLEDSKKAIELSRTDSKLFTTVGCHPTR-CSEF 68
           ++ + +L+  +E+   S    + V    +++SK ++   R D ++  T   H T+  +EF
Sbjct: 275 KRENVELESEIEQLKESHQAAVEVYNKQIDESKTSLNAERKDRQVLQTKRDHVTKESNEF 334

Query: 69  LSNPDDYLQGLRDLISGNKDKVVAIGECGLDYERFHFCEKEVQLKFFEKQL 119
            S+   Y+  +   ++  K +   + E G   ++    + E+ +   +KQL
Sbjct: 335 KSDYGKYMASMSKKVTEGKQEHARLTEYGTKLQK-DLKQDELDIISKQKQL 384


>SB_4139| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 183

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 15/61 (24%), Positives = 26/61 (42%)

Query: 36 GSLEDSKKAIELSRTDSKLFTTVGCHPTRCSEFLSNPDDYLQGLRDLISGNKDKVVAIGE 95
          GS ED+K  +++   + K+  T G H  R  E +     Y       +   K K + + +
Sbjct: 25 GSEEDNKNLVDILNAEGKILVTPGIHKGRRGETIIRRAYYPMTRYGALHLAKQKSIGLND 84

Query: 96 C 96
          C
Sbjct: 85 C 85


>SB_36237| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 527

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 16/39 (41%), Positives = 18/39 (46%)

Query: 35  GGSLEDSKKAIELSRTDSKLFTTVGCHPTRCSEFLSNPD 73
           G S  D+KK  E   T  KL T V CHP      L + D
Sbjct: 323 GSSRRDNKKLSEELSTGRKLKTRVPCHPDELKPQLPDND 361


>SB_49896| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 184

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 16/65 (24%), Positives = 31/65 (47%), Gaps = 2/65 (3%)

Query: 155 VVHSFDGSEQDLQKILELGLSIGINGCSLRSKENIEVASKMPRDKLMIETDCP-WCEIKP 213
           ++ +F+ +   ++   + G  IG+N CS     + +++S  P D L++E   P W    P
Sbjct: 26  IIEAFNFARSRMRLYTDAG-RIGLNACSFVRLHHSKLSSTGPGDPLVLERPPPRWSSNSP 84

Query: 214 THPGY 218
               Y
Sbjct: 85  YSESY 89


>SB_4796| Best HMM Match : Arfaptin (HMM E-Value=3.5e-16)
          Length = 270

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 1/39 (2%)

Query: 155 VVHSFDGSEQDLQKILELGLSI-GINGCSLRSKENIEVA 192
           VV  FD +       L+ G  I G+NG SLR K  ++VA
Sbjct: 46  VVQVFDNTPASKDGTLQAGDEIVGVNGKSLRGKTKVDVA 84


>SB_26290| Best HMM Match : zf-C2H2 (HMM E-Value=5.5e-08)
          Length = 317

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 16/57 (28%), Positives = 26/57 (45%), Gaps = 1/57 (1%)

Query: 46  ELSRTDSKLFTTVGCHPTRCSEFLSNPDDYLQGLRDLISGNKDKVVAIGECGLDYER 102
           E SR+    +   GCHP  C+E  +   D+   L+  I+      +  G+CG   +R
Sbjct: 236 EFSRSKDLKYHEKGCHPCVCNE-CNETFDHENKLKRHINKKHAASLKCGDCGKTLQR 291


>SB_20771| Best HMM Match : Popeye (HMM E-Value=6.4)
          Length = 353

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 12/44 (27%), Positives = 22/44 (50%)

Query: 24 WTSGINKIIVTGGSLEDSKKAIELSRTDSKLFTTVGCHPTRCSE 67
          W S  ++  + G   +D++  +     +S  F + GC+PT C E
Sbjct: 54 WMSPTDRPDLGGKEDDDNRLGLMTDEVESVEFNSSGCYPTVCVE 97


>SB_33374| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4475

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 13/42 (30%), Positives = 19/42 (45%)

Query: 207  PWCEIKPTHPGYCHVNTKFETVKKTKYSLQRNAQVKGRNEPV 248
            P  EI  T+PGY      +  + K + S+ R      R EP+
Sbjct: 3006 PQLEIVATNPGYVFTPISYPALTKERESVVRTIVYGAREEPI 3047


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.138    0.413 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,871,667
Number of Sequences: 59808
Number of extensions: 361323
Number of successful extensions: 788
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 772
Number of HSP's gapped (non-prelim): 16
length of query: 251
length of database: 16,821,457
effective HSP length: 80
effective length of query: 171
effective length of database: 12,036,817
effective search space: 2058295707
effective search space used: 2058295707
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 59 (27.9 bits)