GeneModel BLAST Result against fruitfly

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001984-TA|BGIBMGA001984-PA|IPR001130|TatD-related
deoxyribonuclease, IPR012278|Mg-dependent DNase, TatD
         (251 letters)

Database: fruitfly 
           52,641 sequences; 24,830,863 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY122155-1|AAM52667.1|  291|Drosophila melanogaster LD08659p pro...   298   5e-81
AE013599-259|AAF57413.1|  291|Drosophila melanogaster CG3358-PA,...   298   5e-81
AE013599-258|AAM70836.2|  313|Drosophila melanogaster CG3358-PB,...   298   5e-81
AY060255-1|AAL25294.1|  319|Drosophila melanogaster GH08045p pro...   112   5e-25
AE014297-2969|AAF55876.1|  319|Drosophila melanogaster CG3308-PA...   112   5e-25
AY071301-1|AAL48923.1|  783|Drosophila melanogaster RE32990p pro...    30   3.5  
AF197059-1|AAF62399.1|  783|Drosophila melanogaster retinoblasto...    30   3.5  
AE014297-2127|AAF55258.1|  783|Drosophila melanogaster CG5083-PA...    30   3.5  
BT021333-1|AAX33481.1| 1390|Drosophila melanogaster RE02061p pro...    29   6.1  
AY229991-1|AAP44004.1| 1390|Drosophila melanogaster contactin pr...    29   6.1  
AY095040-1|AAM11368.1| 1036|Drosophila melanogaster LD28757p pro...    29   6.1  
AE014297-73|AAF52137.2| 1390|Drosophila melanogaster CG1084-PA p...    29   6.1  

>AY122155-1|AAM52667.1|  291|Drosophila melanogaster LD08659p
           protein.
          Length = 291

 Score =  298 bits (731), Expect = 5e-81
 Identities = 137/254 (53%), Positives = 181/254 (71%), Gaps = 5/254 (1%)

Query: 1   MYKGEYNGSRKHDPDLDVVLERAWTSGINKIIVTGGSLEDSKKAIELSRTDSKLFTTVGC 60
           M++G Y G++KH+PDL +VLERAW  G+ K+IVT G L+D  +A+EL+  D +++TTVG 
Sbjct: 1   MFQGCYGGTQKHEPDLHIVLERAWQQGLQKVIVTAGCLKDVDEALELASKDERIYTTVGT 60

Query: 61  HPTRCSEFLSNPDDYLQGLRDLISGNKDKVVAIGECGLDYERFHFCEKEVQLKFFEKQLP 120
           HPTRC EF+ +P+ Y   LR  I  N+ KV A+GECGLDY+R HFC +E Q  +FEKQL 
Sbjct: 61  HPTRCEEFVPDPEGYYDQLRSRIKANRTKVRAVGECGLDYDRLHFCAQETQRLYFEKQLD 120

Query: 121 LSLEYNLPLFLHCRAAADDLIEIISRNRDKII---GGVVHSFDGSEQDLQKILEL-GLSI 176
           L+ E+ LPLFLH R AA+D + I+ RNR+KI    GGVVHSF G+ ++ Q+IL   GL I
Sbjct: 121 LAAEFKLPLFLHMRNAAEDFMGILERNRNKIEECGGGVVHSFTGTLEEAQRILAFGGLYI 180

Query: 177 GINGCSLRSKENIEVASKMPRDKLMIETDCPWCEIKPTHPGYCHVNTKFETVKKTKYSLQ 236
           G NGCSL++ EN EV  K+P D++M+ETDCPWC I+P+H G+ HV TKF TVKK K    
Sbjct: 181 GFNGCSLKTDENAEVVRKLPNDRIMLETDCPWCGIRPSHAGHKHVTTKFPTVKK-KEKWT 239

Query: 237 RNAQVKGRNEPVNI 250
             + + GR EP  I
Sbjct: 240 AESLIDGRCEPCQI 253


>AE013599-259|AAF57413.1|  291|Drosophila melanogaster CG3358-PA,
           isoform A protein.
          Length = 291

 Score =  298 bits (731), Expect = 5e-81
 Identities = 137/254 (53%), Positives = 181/254 (71%), Gaps = 5/254 (1%)

Query: 1   MYKGEYNGSRKHDPDLDVVLERAWTSGINKIIVTGGSLEDSKKAIELSRTDSKLFTTVGC 60
           M++G Y G++KH+PDL +VLERAW  G+ K+IVT G L+D  +A+EL+  D +++TTVG 
Sbjct: 1   MFQGCYGGTQKHEPDLHIVLERAWQQGLQKVIVTAGCLKDVDEALELASKDERIYTTVGT 60

Query: 61  HPTRCSEFLSNPDDYLQGLRDLISGNKDKVVAIGECGLDYERFHFCEKEVQLKFFEKQLP 120
           HPTRC EF+ +P+ Y   LR  I  N+ KV A+GECGLDY+R HFC +E Q  +FEKQL 
Sbjct: 61  HPTRCEEFVPDPEGYYDQLRSRIKANRTKVRAVGECGLDYDRLHFCAQETQRLYFEKQLD 120

Query: 121 LSLEYNLPLFLHCRAAADDLIEIISRNRDKII---GGVVHSFDGSEQDLQKILEL-GLSI 176
           L+ E+ LPLFLH R AA+D + I+ RNR+KI    GGVVHSF G+ ++ Q+IL   GL I
Sbjct: 121 LAAEFKLPLFLHMRNAAEDFMGILERNRNKIEECGGGVVHSFTGTLEEAQRILAFGGLYI 180

Query: 177 GINGCSLRSKENIEVASKMPRDKLMIETDCPWCEIKPTHPGYCHVNTKFETVKKTKYSLQ 236
           G NGCSL++ EN EV  K+P D++M+ETDCPWC I+P+H G+ HV TKF TVKK K    
Sbjct: 181 GFNGCSLKTDENAEVVRKLPNDRIMLETDCPWCGIRPSHAGHKHVTTKFPTVKK-KEKWT 239

Query: 237 RNAQVKGRNEPVNI 250
             + + GR EP  I
Sbjct: 240 AESLIDGRCEPCQI 253


>AE013599-258|AAM70836.2|  313|Drosophila melanogaster CG3358-PB,
           isoform B protein.
          Length = 313

 Score =  298 bits (731), Expect = 5e-81
 Identities = 137/254 (53%), Positives = 181/254 (71%), Gaps = 5/254 (1%)

Query: 1   MYKGEYNGSRKHDPDLDVVLERAWTSGINKIIVTGGSLEDSKKAIELSRTDSKLFTTVGC 60
           M++G Y G++KH+PDL +VLERAW  G+ K+IVT G L+D  +A+EL+  D +++TTVG 
Sbjct: 23  MFQGCYGGTQKHEPDLHIVLERAWQQGLQKVIVTAGCLKDVDEALELASKDERIYTTVGT 82

Query: 61  HPTRCSEFLSNPDDYLQGLRDLISGNKDKVVAIGECGLDYERFHFCEKEVQLKFFEKQLP 120
           HPTRC EF+ +P+ Y   LR  I  N+ KV A+GECGLDY+R HFC +E Q  +FEKQL 
Sbjct: 83  HPTRCEEFVPDPEGYYDQLRSRIKANRTKVRAVGECGLDYDRLHFCAQETQRLYFEKQLD 142

Query: 121 LSLEYNLPLFLHCRAAADDLIEIISRNRDKII---GGVVHSFDGSEQDLQKILEL-GLSI 176
           L+ E+ LPLFLH R AA+D + I+ RNR+KI    GGVVHSF G+ ++ Q+IL   GL I
Sbjct: 143 LAAEFKLPLFLHMRNAAEDFMGILERNRNKIEECGGGVVHSFTGTLEEAQRILAFGGLYI 202

Query: 177 GINGCSLRSKENIEVASKMPRDKLMIETDCPWCEIKPTHPGYCHVNTKFETVKKTKYSLQ 236
           G NGCSL++ EN EV  K+P D++M+ETDCPWC I+P+H G+ HV TKF TVKK K    
Sbjct: 203 GFNGCSLKTDENAEVVRKLPNDRIMLETDCPWCGIRPSHAGHKHVTTKFPTVKK-KEKWT 261

Query: 237 RNAQVKGRNEPVNI 250
             + + GR EP  I
Sbjct: 262 AESLIDGRCEPCQI 275


>AY060255-1|AAL25294.1|  319|Drosophila melanogaster GH08045p
           protein.
          Length = 319

 Score =  112 bits (269), Expect = 5e-25
 Identities = 75/248 (30%), Positives = 128/248 (51%), Gaps = 13/248 (5%)

Query: 9   SRKHDPDLDVVLERAWTSGINKIIVTGGSLEDSKKAIELSRT-DSKLFTTVGCHPTRCSE 67
           ++K+  DLD V++RA  +G+ K++V G S++ SK+A+ LSR     +++T G HP     
Sbjct: 46  NKKYSRDLDSVVQRARDAGVQKLMVHGTSVKSSKEALRLSRIYPDIIYSTAGIHPHDSKS 105

Query: 68  FLSNPDDYLQGLRDLISGNKDKVVAIGECGLDYERFHFCEKEVQLKFFEKQLPLSLEYNL 127
            +  P  +   L  +      + VAIG CGLDY+R  F E + Q + F KQL L++  N 
Sbjct: 106 IVEEPATWFD-LEHI--AQAQECVAIGPCGLDYQR-DFSEPDAQRQIFAKQLHLAIRLNK 161

Query: 128 PLFLHCRAAADDLIEIISRNRDKIIGGVVHSFDGSEQDLQKILELGLSIGINGCSLRSKE 187
           PL +H R+A  DL+EI+ +  + +   ++  F G+ ++  K L+    I + G   + K 
Sbjct: 162 PLLIHERSAQLDLLEILDK-FENLPPVIIRGFMGTAEEALKYLDRRFYISLTGYLCKDKS 220

Query: 188 NIEVA-----SKMPRDKLMIETDCPWCEIKPTHPGYCHVNTKFETVKKTKYSLQRNAQVK 242
           +  V        +P D+L++ETD P+     T       + K    +++   L R    +
Sbjct: 221 DTGVRRLLEDGTLPLDRLLVETDAPFM-YPNTRASKLPQHVKTGITERSLLYLHRYCTFQ 279

Query: 243 GRNEPVNI 250
            RNEP ++
Sbjct: 280 -RNEPCSL 286


>AE014297-2969|AAF55876.1|  319|Drosophila melanogaster CG3308-PA
           protein.
          Length = 319

 Score =  112 bits (269), Expect = 5e-25
 Identities = 75/248 (30%), Positives = 128/248 (51%), Gaps = 13/248 (5%)

Query: 9   SRKHDPDLDVVLERAWTSGINKIIVTGGSLEDSKKAIELSRT-DSKLFTTVGCHPTRCSE 67
           ++K+  DLD V++RA  +G+ K++V G S++ SK+A+ LSR     +++T G HP     
Sbjct: 46  NKKYSRDLDSVVQRARDAGVQKLMVHGTSVKSSKEALRLSRIYPDIIYSTAGIHPHDSKS 105

Query: 68  FLSNPDDYLQGLRDLISGNKDKVVAIGECGLDYERFHFCEKEVQLKFFEKQLPLSLEYNL 127
            +  P  +   L  +      + VAIG CGLDY+R  F E + Q + F KQL L++  N 
Sbjct: 106 IVEEPATWFD-LEHI--AQAQECVAIGPCGLDYQR-DFSEPDAQKQIFAKQLHLAIRLNK 161

Query: 128 PLFLHCRAAADDLIEIISRNRDKIIGGVVHSFDGSEQDLQKILELGLSIGINGCSLRSKE 187
           PL +H R+A  DL+EI+ +  + +   ++  F G+ ++  K L+    I + G   + K 
Sbjct: 162 PLLIHERSAQLDLLEILDK-FENLPPVIIRGFMGTAEEALKYLDRRFYISLTGYLCKDKS 220

Query: 188 NIEVA-----SKMPRDKLMIETDCPWCEIKPTHPGYCHVNTKFETVKKTKYSLQRNAQVK 242
           +  V        +P D+L++ETD P+     T       + K    +++   L R    +
Sbjct: 221 DTGVRRLLEDGTLPLDRLLVETDAPFM-YPNTRASKLPQHVKTGITERSLLYLHRYCTFQ 279

Query: 243 GRNEPVNI 250
            RNEP ++
Sbjct: 280 -RNEPCSL 286


>AY071301-1|AAL48923.1|  783|Drosophila melanogaster RE32990p
           protein.
          Length = 783

 Score = 29.9 bits (64), Expect = 3.5
 Identities = 23/81 (28%), Positives = 34/81 (41%), Gaps = 3/81 (3%)

Query: 155 VVHSFDGSEQDLQKILELGLSIGINGCSLRSKENIEVASKMPRDKLMIETDCP-WCEIKP 213
           V+H F     D QKILEL +            ++++V  +M  D L+       W E+  
Sbjct: 482 VLHCFSLDAYDFQKILELVVRYDHGFLGRELIKHLDVVEEMCLDSLIFRKSSQLWWELNQ 541

Query: 214 THPGYCHVNTKFETVKKTKYS 234
             P Y  V+   ET  K  +S
Sbjct: 542 RLPRYKEVDA--ETEDKENFS 560


>AF197059-1|AAF62399.1|  783|Drosophila melanogaster retinoblastoma
           protein homologRBF2 protein.
          Length = 783

 Score = 29.9 bits (64), Expect = 3.5
 Identities = 23/81 (28%), Positives = 34/81 (41%), Gaps = 3/81 (3%)

Query: 155 VVHSFDGSEQDLQKILELGLSIGINGCSLRSKENIEVASKMPRDKLMIETDCP-WCEIKP 213
           V+H F     D QKILEL +            ++++V  +M  D L+       W E+  
Sbjct: 482 VLHCFSLDAYDFQKILELVVRYDHGFLGRELIKHLDVVEEMCLDSLIFRKSSQLWWELNQ 541

Query: 214 THPGYCHVNTKFETVKKTKYS 234
             P Y  V+   ET  K  +S
Sbjct: 542 RLPRYKEVDA--ETEDKENFS 560


>AE014297-2127|AAF55258.1|  783|Drosophila melanogaster CG5083-PA
           protein.
          Length = 783

 Score = 29.9 bits (64), Expect = 3.5
 Identities = 23/81 (28%), Positives = 34/81 (41%), Gaps = 3/81 (3%)

Query: 155 VVHSFDGSEQDLQKILELGLSIGINGCSLRSKENIEVASKMPRDKLMIETDCP-WCEIKP 213
           V+H F     D QKILEL +            ++++V  +M  D L+       W E+  
Sbjct: 482 VLHCFSLDAYDFQKILELVVRYDHGFLGRELIKHLDVVEEMCLDSLIFRKSSQLWWELNQ 541

Query: 214 THPGYCHVNTKFETVKKTKYS 234
             P Y  V+   ET  K  +S
Sbjct: 542 RLPRYKEVDA--ETEDKENFS 560


>BT021333-1|AAX33481.1| 1390|Drosophila melanogaster RE02061p
           protein.
          Length = 1390

 Score = 29.1 bits (62), Expect = 6.1
 Identities = 15/35 (42%), Positives = 25/35 (71%), Gaps = 3/35 (8%)

Query: 111 QLKFFEK--QLPLSLEYNLPLFLHCRAAADDLIEI 143
           +++F E   Q  +S E++L +FLHC AA D+L++I
Sbjct: 847 EIRFIETPPQRIVSKEHDL-IFLHCEAAFDELLDI 880


>AY229991-1|AAP44004.1| 1390|Drosophila melanogaster contactin
           protein.
          Length = 1390

 Score = 29.1 bits (62), Expect = 6.1
 Identities = 15/35 (42%), Positives = 25/35 (71%), Gaps = 3/35 (8%)

Query: 111 QLKFFEK--QLPLSLEYNLPLFLHCRAAADDLIEI 143
           +++F E   Q  +S E++L +FLHC AA D+L++I
Sbjct: 847 EIRFIETPPQRIVSKEHDL-IFLHCEAAFDELLDI 880


>AY095040-1|AAM11368.1| 1036|Drosophila melanogaster LD28757p
           protein.
          Length = 1036

 Score = 29.1 bits (62), Expect = 6.1
 Identities = 15/35 (42%), Positives = 25/35 (71%), Gaps = 3/35 (8%)

Query: 111 QLKFFEK--QLPLSLEYNLPLFLHCRAAADDLIEI 143
           +++F E   Q  +S E++L +FLHC AA D+L++I
Sbjct: 493 EIRFIETPPQRIVSKEHDL-IFLHCEAAFDELLDI 526


>AE014297-73|AAF52137.2| 1390|Drosophila melanogaster CG1084-PA
           protein.
          Length = 1390

 Score = 29.1 bits (62), Expect = 6.1
 Identities = 15/35 (42%), Positives = 25/35 (71%), Gaps = 3/35 (8%)

Query: 111 QLKFFEK--QLPLSLEYNLPLFLHCRAAADDLIEI 143
           +++F E   Q  +S E++L +FLHC AA D+L++I
Sbjct: 847 EIRFIETPPQRIVSKEHDL-IFLHCEAAFDELLDI 880


  Database: fruitfly
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 24,830,863
  Number of sequences in database:  52,641
  
Lambda     K      H
   0.318    0.138    0.413 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,839,912
Number of Sequences: 52641
Number of extensions: 545726
Number of successful extensions: 1231
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 1214
Number of HSP's gapped (non-prelim): 12
length of query: 251
length of database: 24,830,863
effective HSP length: 83
effective length of query: 168
effective length of database: 20,461,660
effective search space: 3437558880
effective search space used: 3437558880
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 61 (28.7 bits)