GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001984-TA|BGIBMGA001984-PA|IPR001130|TatD-related
deoxyribonuclease, IPR012278|Mg-dependent DNase, TatD
         (251 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY303576-1|AAP57298.1|  286|Caenorhabditis elegans cell death-re...   112   3e-25
AF036694-6|AAB88340.1|  286|Caenorhabditis elegans Cell-death-re...   112   3e-25
U80836-6|AAB37894.2|  259|Caenorhabditis elegans Hypothetical pr...    81   6e-16
AL132863-1|CAB60573.1|  477|Caenorhabditis elegans Hypothetical ...    77   2e-14
AL110480-1|CAB60325.2|  437|Caenorhabditis elegans Hypothetical ...    64   1e-10
U80448-8|AAB37821.3| 1014|Caenorhabditis elegans Hypothetical pr...    28   5.5  
AC006769-9|AAF60585.2|  779|Caenorhabditis elegans Hypothetical ...    28   5.5  
AY204196-1|AAO39199.1|  412|Caenorhabditis elegans nuclear recep...    28   7.3  
AC006777-2|AAK72308.3|  326|Caenorhabditis elegans Nuclear hormo...    28   7.3  
AC006777-1|ABB51174.1|  424|Caenorhabditis elegans Nuclear hormo...    28   7.3  
AC006645-2|AAF39844.2|  796|Caenorhabditis elegans Hypothetical ...    28   7.3  
Z74040-6|CAA98509.2|  457|Caenorhabditis elegans Hypothetical pr...    27   9.6  

>AY303576-1|AAP57298.1|  286|Caenorhabditis elegans cell
           death-related nuclease 2 protein.
          Length = 286

 Score =  112 bits (269), Expect = 3e-25
 Identities = 67/207 (32%), Positives = 118/207 (57%), Gaps = 12/207 (5%)

Query: 8   GSRKHDPDLDVVLERAWTSGINKIIVTGGSLEDSKKAIEL-SRTDSKLFTTVGCHPTRCS 66
           G   +  DL+ VL+RA  +G++KI+VTG S + S +  +L  +    L+ T G HP    
Sbjct: 14  GHPSYQKDLNDVLDRAKQAGLSKIMVTGTSEKISHECADLVEKYPGFLYFTAGVHPHDAK 73

Query: 67  EFLSNPDDYLQGLRDLISGNKDKVVAIGECGLDYERFHFCEKEVQLKFFEKQLPLSLEYN 126
           ++    D  L+ L+ L        VA+GECGLD+ R +F  ++VQ + F KQ+ ++++  
Sbjct: 74  DW---NDGTLEALKKL--QENPSCVAVGECGLDFNR-NFSPQDVQKEVFAKQVDMAVKLQ 127

Query: 127 LPLFLHCRAAADDLIEIISRNRDKIIGGVVHSFDGSEQDLQKILELGLSIGINGCSLRSK 186
            PLF+H R A +D+++I++     +   V+H F G+  + +K LE+G  IG+ G   + +
Sbjct: 128 KPLFIHEREAHEDMVKILTAAGPSLPPAVIHCFTGTVVEAKKYLEMGFYIGLTGFLWKDR 187

Query: 187 ENIEV-----ASKMPRDKLMIETDCPW 208
            +  V     + ++P +KL++ETD P+
Sbjct: 188 SDNGVQAGLRSGEIPIEKLVLETDAPY 214


>AF036694-6|AAB88340.1|  286|Caenorhabditis elegans
           Cell-death-related nuclease protein2 protein.
          Length = 286

 Score =  112 bits (269), Expect = 3e-25
 Identities = 67/207 (32%), Positives = 118/207 (57%), Gaps = 12/207 (5%)

Query: 8   GSRKHDPDLDVVLERAWTSGINKIIVTGGSLEDSKKAIEL-SRTDSKLFTTVGCHPTRCS 66
           G   +  DL+ VL+RA  +G++KI+VTG S + S +  +L  +    L+ T G HP    
Sbjct: 14  GHPSYQKDLNDVLDRAKQAGLSKIMVTGTSEKISHECADLVEKYPGFLYFTAGVHPHDAK 73

Query: 67  EFLSNPDDYLQGLRDLISGNKDKVVAIGECGLDYERFHFCEKEVQLKFFEKQLPLSLEYN 126
           ++    D  L+ L+ L        VA+GECGLD+ R +F  ++VQ + F KQ+ ++++  
Sbjct: 74  DW---NDGTLEALKKL--QENPSCVAVGECGLDFNR-NFSPQDVQKEVFAKQVDMAVKLQ 127

Query: 127 LPLFLHCRAAADDLIEIISRNRDKIIGGVVHSFDGSEQDLQKILELGLSIGINGCSLRSK 186
            PLF+H R A +D+++I++     +   V+H F G+  + +K LE+G  IG+ G   + +
Sbjct: 128 KPLFIHEREAHEDMVKILTAAGPSLPPAVIHCFTGTVVEAKKYLEMGFYIGLTGFLWKDR 187

Query: 187 ENIEV-----ASKMPRDKLMIETDCPW 208
            +  V     + ++P +KL++ETD P+
Sbjct: 188 SDNGVQAGLRSGEIPIEKLVLETDAPY 214


>U80836-6|AAB37894.2|  259|Caenorhabditis elegans Hypothetical
           protein B0432.8 protein.
          Length = 259

 Score = 81.4 bits (192), Expect = 6e-16
 Identities = 58/202 (28%), Positives = 98/202 (48%), Gaps = 6/202 (2%)

Query: 11  KHDPDLDVVLERAWTSGINKIIVTGGSLEDSKKAIELSRT-DSKLFTTVGCHPTRCSEFL 69
           K   DLD V+  A  +GI K+I         +K+I +S+     ++T +G HP +     
Sbjct: 12  KFKEDLDDVIGHAHATGIQKMINFPEFESQFEKSIGISKKWPGSVYTGIGIHPIQ-KRGK 70

Query: 70  SNPDDYLQGLRDLISGNKDKVVAIGECGLDYERFHFC----EKEVQLKFFEKQLPLSLEY 125
           S    ++  +      ++  ++ +GECGLD+    F     + E Q   F+ Q+ L+  +
Sbjct: 71  SAKMKHISKMEQFFVEHERDIICVGECGLDHTISQFKLTTEDFEEQETVFKWQIDLAKHF 130

Query: 126 NLPLFLHCRAAADDLIEIISRNRDKIIGGVVHSFDGSEQDLQKILELGLSIGINGCSLRS 185
             PL +H R+AA   IEI+          V+H+FDG+  DL+  LE G    I     +S
Sbjct: 131 EKPLNVHSRSAARRTIEILLECHVAPDQVVLHAFDGTPGDLKLGLEAGYLFSIPPSFGKS 190

Query: 186 KENIEVASKMPRDKLMIETDCP 207
           +E  ++   +P  +L++ETD P
Sbjct: 191 EETTQLIESIPLSQLLLETDSP 212


>AL132863-1|CAB60573.1|  477|Caenorhabditis elegans Hypothetical
           protein Y37H2A.1 protein.
          Length = 477

 Score = 76.6 bits (180), Expect = 2e-14
 Identities = 56/187 (29%), Positives = 92/187 (49%), Gaps = 15/187 (8%)

Query: 35  GGSLEDSKKAIELSRTDSKLFTTVGCHPTRCSEFLSNPDDYLQGLRDLISGNKD-KVVAI 93
           GG+  D    I    ++  L TT GCHP    E+ S  D + Q L  ++S     KV+A+
Sbjct: 238 GGNGYDIDWIINEIESNIYLGTTWGCHPHYAQEWASK-DIFWQTLEHILSNAATWKVLAV 296

Query: 94  GECGLDYERFHFCEKEVQLKFFEKQLPLSLEYNLPLFLHCRA-----AADDLIEIISRNR 148
           GECGLD  R    + EVQ   FEK + L+ +Y LPL +HCR+     A +  + I+ +  
Sbjct: 297 GECGLDLHRC-ISDLEVQKMVFEKHIDLAYKYQLPLVIHCRSGQKGRAEEQCLRILKKKM 355

Query: 149 D---KIIGGVVHSFDGSEQDLQKILEL--GLSIGINGC--SLRSKENIEVASKMPRDKLM 201
           D   K +    H F  + +  Q  ++    +  G       +R ++ +E    +P ++++
Sbjct: 356 DENHKFLKIHRHCFTETWEVAQMWMKQCPNVYFGYTAAIFKMRERQQLEAIRHIPLNRIL 415

Query: 202 IETDCPW 208
           +ETD P+
Sbjct: 416 LETDAPY 422


>AL110480-1|CAB60325.2|  437|Caenorhabditis elegans Hypothetical
           protein Y24F12A.1 protein.
          Length = 437

 Score = 63.7 bits (148), Expect = 1e-10
 Identities = 52/192 (27%), Positives = 91/192 (47%), Gaps = 14/192 (7%)

Query: 33  VTGGSLEDSKKAIELSRTDSKLFTTVGCHPTRCSEFLSNPDDYLQGLRDLISGNKD-KVV 91
           V G S  D +  ++   +   L TT GCHP   ++       +   +  ++S  ++ KV+
Sbjct: 197 VKGNSSYDVEWIVKELASPLYLGTTWGCHP-HFAQHWGRMGVFWTTMEYILSDAEEWKVL 255

Query: 92  AIGECGLDYERFHFCEKEVQLKFFEKQLPLSLEYNLPLFLHCR-----AAADDLIEIISR 146
           A+GECG+D  R    E EVQ   FEK + L+ ++ LPL +HCR      A ++ ++I+ +
Sbjct: 256 AVGECGIDLHRCE-SELEVQKDVFEKHVALAFKFKLPLVIHCRNGSKGRAEEECLQILKK 314

Query: 147 NRD---KIIGGVVHSFDGSEQDLQKILEL--GLSIGIN-GCSLRSKENIEVASKMPRDKL 200
             D   K +    H F  + +  Q  L+    +  G            I+    +P D++
Sbjct: 315 KMDVNHKFLKIHRHCFTENWEVAQMWLKQCPDVHFGFTPAVFTMGAPQIQAIRNIPLDRI 374

Query: 201 MIETDCPWCEIK 212
           ++ETD P+ + K
Sbjct: 375 LLETDGPYFKPK 386


>U80448-8|AAB37821.3| 1014|Caenorhabditis elegans Hypothetical
           protein F59A3.1 protein.
          Length = 1014

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 15/53 (28%), Positives = 29/53 (54%), Gaps = 1/53 (1%)

Query: 166 LQKILELGLSIGINGCSLRSK-ENIEVASKMPRDKLMIETDCPWCEIKPTHPG 217
           L+K  ELG+SIG +  ++  K   I   + M +++L+ ++   +  +   HPG
Sbjct: 588 LKKAFELGISIGCDDTNVEKKAATIGTIADMIKNELIKDSVSEFSVVPSAHPG 640


>AC006769-9|AAF60585.2|  779|Caenorhabditis elegans Hypothetical
           protein Y45G12C.11 protein.
          Length = 779

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 22/62 (35%), Positives = 32/62 (51%), Gaps = 8/62 (12%)

Query: 69  LSNPDDYLQGLRDLISGNKDKVVAIGECGLDY--ERFHFCEKEVQLKFFEKQLPLSLEYN 126
           +S P D ++ L   +  N   VVA  +  LD+  E  HF   E     ++KQLP SL ++
Sbjct: 68  ISLPTDDVKRLASFVDWNL-VVVADTKTPLDWNLENVHFLSVE-----YQKQLPFSLAFS 121

Query: 127 LP 128
           LP
Sbjct: 122 LP 123


>AY204196-1|AAO39199.1|  412|Caenorhabditis elegans nuclear receptor
           NHR-110 protein.
          Length = 412

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 20/80 (25%), Positives = 36/80 (45%), Gaps = 3/80 (3%)

Query: 28  INKIIVTGGSLEDSKKAIELSRTDSKLFTTVGCHPT--RCSEFLSNPDDYLQGLRDLISG 85
           I+ ++      E S K I++S+   K    +  +P   R  +  SN +    G ++L SG
Sbjct: 124 ISPLVSFSNRREKSSKCIDISQIVKKAVAKL-LNPAMIRNIDSTSNLEQLTSGFKNLQSG 182

Query: 86  NKDKVVAIGECGLDYERFHF 105
            K+ +  I    L ++  HF
Sbjct: 183 QKENIPKIDHITLAHQTQHF 202


>AC006777-2|AAK72308.3|  326|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 110, isoform a protein.
          Length = 326

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 20/80 (25%), Positives = 36/80 (45%), Gaps = 3/80 (3%)

Query: 28  INKIIVTGGSLEDSKKAIELSRTDSKLFTTVGCHPT--RCSEFLSNPDDYLQGLRDLISG 85
           I+ ++      E S K I++S+   K    +  +P   R  +  SN +    G ++L SG
Sbjct: 38  ISPLVSFSNRREKSSKCIDISQIVKKAVAKL-LNPAMIRNIDSTSNLEQLTSGFKNLQSG 96

Query: 86  NKDKVVAIGECGLDYERFHF 105
            K+ +  I    L ++  HF
Sbjct: 97  QKENIPKIDHITLAHQTQHF 116


>AC006777-1|ABB51174.1|  424|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 110, isoform b protein.
          Length = 424

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 20/80 (25%), Positives = 36/80 (45%), Gaps = 3/80 (3%)

Query: 28  INKIIVTGGSLEDSKKAIELSRTDSKLFTTVGCHPT--RCSEFLSNPDDYLQGLRDLISG 85
           I+ ++      E S K I++S+   K    +  +P   R  +  SN +    G ++L SG
Sbjct: 136 ISPLVSFSNRREKSSKCIDISQIVKKAVAKL-LNPAMIRNIDSTSNLEQLTSGFKNLQSG 194

Query: 86  NKDKVVAIGECGLDYERFHF 105
            K+ +  I    L ++  HF
Sbjct: 195 QKENIPKIDHITLAHQTQHF 214


>AC006645-2|AAF39844.2|  796|Caenorhabditis elegans Hypothetical
           protein F56A4.6 protein.
          Length = 796

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 22/62 (35%), Positives = 32/62 (51%), Gaps = 8/62 (12%)

Query: 69  LSNPDDYLQGLRDLISGNKDKVVAIGECGLDY--ERFHFCEKEVQLKFFEKQLPLSLEYN 126
           +S P D ++ L   +  N   VVA  +  LD+  E  HF   E     ++KQLP SL ++
Sbjct: 68  ISLPTDDVKVLASFVDWNL-VVVADTKTPLDWNLENVHFLSVE-----YQKQLPFSLAFS 121

Query: 127 LP 128
           LP
Sbjct: 122 LP 123


>Z74040-6|CAA98509.2|  457|Caenorhabditis elegans Hypothetical
           protein K10D6.1 protein.
          Length = 457

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 14/38 (36%), Positives = 24/38 (63%), Gaps = 1/38 (2%)

Query: 93  IGECGLDYERFHFCEKEVQLKFFEKQL-PLSLEYNLPL 129
           I EC L YE F++  +EV++++ EK   P+S+   + L
Sbjct: 192 IQECHLIYESFNYNNQEVRMRWNEKSAEPVSVTNKIRL 229


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.318    0.138    0.413 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,537,686
Number of Sequences: 27539
Number of extensions: 282824
Number of successful extensions: 632
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 612
Number of HSP's gapped (non-prelim): 12
length of query: 251
length of database: 12,573,161
effective HSP length: 80
effective length of query: 171
effective length of database: 10,370,041
effective search space: 1773277011
effective search space used: 1773277011
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 58 (27.5 bits)