GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001984-TA|BGIBMGA001984-PA|IPR001130|TatD-related
deoxyribonuclease, IPR012278|Mg-dependent DNase, TatD
         (251 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ855487-1|ABH88174.1|  125|Apis mellifera chemosensory protein ...    23   3.5  
AJ973402-1|CAJ01449.1|  125|Apis mellifera hypothetical protein ...    23   3.5  

>DQ855487-1|ABH88174.1|  125|Apis mellifera chemosensory protein 6
           protein.
          Length = 125

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 10/23 (43%), Positives = 15/23 (65%)

Query: 164 QDLQKILELGLSIGINGCSLRSK 186
           ++L+KIL   LS G N C+ + K
Sbjct: 58  RELKKILPDALSTGCNKCNEKQK 80


>AJ973402-1|CAJ01449.1|  125|Apis mellifera hypothetical protein
           protein.
          Length = 125

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 10/23 (43%), Positives = 15/23 (65%)

Query: 164 QDLQKILELGLSIGINGCSLRSK 186
           ++L+KIL   LS G N C+ + K
Sbjct: 58  RELKKILPDALSTGCNKCNEKQK 80


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.318    0.138    0.413 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 76,706
Number of Sequences: 429
Number of extensions: 3110
Number of successful extensions: 6
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 4
Number of HSP's gapped (non-prelim): 2
length of query: 251
length of database: 140,377
effective HSP length: 56
effective length of query: 195
effective length of database: 116,353
effective search space: 22688835
effective search space used: 22688835
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 43 (21.4 bits)