Silkworm BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001983-TA|BGIBMGA001983-PA|IPR000215|Proteinase
inhibitor I4, serpin
         (377 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC4B3.05c |hem12||uroporphyrinogen decarboxylase |Schizosaccha...    29   1.4  
SPAC1F3.01 |rrp6|SPAC3H8.11|exosome subunit Rrp6 |Schizosaccharo...    28   2.5  
SPBC9B6.04c |tuf1||mitochondrial translation elongation factor E...    27   4.3  
SPBC3B8.11 |rrn6||RNA polymerase I transcription factor subunit ...    27   5.7  
SPBPB2B2.18 |||dubious|Schizosaccharomyces pombe|chr 2|||Manual        26   7.6  

>SPCC4B3.05c |hem12||uroporphyrinogen decarboxylase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 355

 Score = 28.7 bits (61), Expect = 1.4
 Identities = 17/63 (26%), Positives = 32/63 (50%)

Query: 214 EELGAKMIELPYKEPGFRMVVVLPDKIDGLPAVLEKAAEKGLLEDVFNLSPAGRDIELEI 273
           + LG +++ L  K P F   +V+P+ ID L      +A+ G + D  +L+    D ++ +
Sbjct: 81  QALGMQVVMLEQKGPHFPKPLVVPEDIDLLEKTPNISAKLGYVMDAISLTREKLDGQVPL 140

Query: 274 PKF 276
             F
Sbjct: 141 MGF 143


>SPAC1F3.01 |rrp6|SPAC3H8.11|exosome subunit Rrp6
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 777

 Score = 27.9 bits (59), Expect = 2.5
 Identities = 25/99 (25%), Positives = 37/99 (37%), Gaps = 1/99 (1%)

Query: 106 LADAFSRTANLFRSEVDNINFGDPKNAADIINRWADEQTQGHIKTPVSEDKIDPATAVAM 165
           ++  F R   L  S+VD     D  +  DI NRWA+      I    ++  ID A  +  
Sbjct: 42  VSSRFMRLIELLLSKVDRSRAEDIVDVEDIDNRWAEVSDTLDILFEKADYSIDKAQGLLK 101

Query: 166 FNVIFFQGHWHVPFNASETEEK-DFHVDEKTTIKKPTMR 203
              I          N    +EK  + V     + KP +R
Sbjct: 102 KPAIETHASTSDVANKKPKKEKLPYKVIHAAHLTKPQLR 140


>SPBC9B6.04c |tuf1||mitochondrial translation elongation factor
           EF-Tu Tuf1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 439

 Score = 27.1 bits (57), Expect = 4.3
 Identities = 17/76 (22%), Positives = 36/76 (47%), Gaps = 5/76 (6%)

Query: 217 GAKMIELPYKEP--GFRMVVVLPDKIDGLPAVLEKAAEKGLL---EDVFNLSPAGRDIEL 271
           G+ +  L  +EP  G   +  L + +D    + E+  +   L   EDVF++S  G  +  
Sbjct: 213 GSALCALEGREPEIGLNSITKLMEAVDSYITLPERKTDVPFLMAIEDVFSISGRGTVVTG 272

Query: 272 EIPKFEIRSGLDLNII 287
            + +  ++ G ++ I+
Sbjct: 273 RVERGTLKKGAEIEIV 288


>SPBC3B8.11 |rrn6||RNA polymerase I transcription factor subunit
           Rrn6 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 868

 Score = 26.6 bits (56), Expect = 5.7
 Identities = 21/73 (28%), Positives = 33/73 (45%), Gaps = 2/73 (2%)

Query: 54  GAQSKEEIREILGGGEAQESSHTYGLLNQRYAEFDPKFLTVANKIYVSDQYKLADAFSRT 113
           G +  E++R IL   E  + S TY + +      DP     ++  Y+S Q       S+ 
Sbjct: 761 GLELNEDVRNILENWEIGKISSTYVIGDSAVETEDPSSSQFSD-FYISQQQSSVLPSSQI 819

Query: 114 ANLFRSEVDNINF 126
           A +F S+ D  NF
Sbjct: 820 ATVF-SQEDVPNF 831


>SPBPB2B2.18 |||dubious|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 175

 Score = 26.2 bits (55), Expect = 7.6
 Identities = 11/27 (40%), Positives = 14/27 (51%)

Query: 172 QGHWHVPFNASETEEKDFHVDEKTTIK 198
           Q  WH P N    E++  H D+  TIK
Sbjct: 63  QCDWHEPANVYSIEQRRSHDDDLPTIK 89


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.137    0.390 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,687,240
Number of Sequences: 5004
Number of extensions: 72106
Number of successful extensions: 171
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 168
Number of HSP's gapped (non-prelim): 5
length of query: 377
length of database: 2,362,478
effective HSP length: 74
effective length of query: 303
effective length of database: 1,992,182
effective search space: 603631146
effective search space used: 603631146
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 55 (26.2 bits)