GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001982-TA|BGIBMGA001982-PA|IPR002931|Transglutaminase-
like
         (472 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1709.14 |||peptide N-glycanase |Schizosaccharomyces pombe|ch...   171   2e-43
SPAC1142.08 |fhl1|SPAC8C9.01|fork head transcription factor Fhl1...    29   1.9  
SPAP27G11.05c |vps41||vacuolar protein sorting-associated protei...    27   7.5  
SPCC1020.13c ||SPCC14G10.05|phospholipase |Schizosaccharomyces p...    27   7.5  

>SPBC1709.14 |||peptide N-glycanase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 333

 Score =  171 bits (416), Expect = 2e-43
 Identities = 94/276 (34%), Positives = 141/276 (51%), Gaps = 17/276 (6%)

Query: 47  FLLKIQDLFNGMQVYEDEDLLAHARDQIPLVTLQLMALDRVREQQKKI-KMGEIKANDLP 105
           F  +++ +     +YED +L  +A        L ++ LD++ +   ++ K G+       
Sbjct: 31  FYHEVRQMSQHPWMYEDPELQDYA--------LSILPLDKLFQDASELEKEGD---GSWG 79

Query: 106 FDTALLMELLDWFKHDFFKWVDKPDCDLCGERTVNHENAIMTIEGE---TCRVELYQCTV 162
           +   ++  LL WFK +FF WV++P C+ CG  T    N     E +      VELYQC V
Sbjct: 80  YQDYVIQALLKWFKREFFVWVNQPPCEKCGGETHMTGNGPPNEEEKWNGVRNVELYQCNV 139

Query: 163 CEGGTAMFPRYXXXXXXXXXXSGRCGEWANCFTLLCRALGYDTRYVYDVTDHVWCEVFDY 222
           C G    FPRY           GRCGEWANCFT LCRALG   R++++  DHVW EV+  
Sbjct: 140 C-GHNQRFPRYNRIRALLDSRKGRCGEWANCFTFLCRALGSRARWIWNAEDHVWTEVYSN 198

Query: 223 DSNQWLHVDPCEAKLNTPLMYSHGWGKRLSYVIAFSRDDLQDVTWRYTTNHKEVLKYRYL 282
              +W+HVD  E   + PL+Y  GWGK++SY + F  D ++DV+ RY   H E    R  
Sbjct: 199 KQQRWVHVDSGEESFDEPLIYEQGWGKKMSYCLGFGIDSVRDVSHRY-IRHPENGLPRDR 257

Query: 283 CTETELISTIMTLRKHKQRDVTEARRRYLAKRTLEE 318
           C E+ L   +  +    +  +T++ R+ L +    E
Sbjct: 258 CPESVLQQALHEINIEFRSRLTDSERKALEEEDKRE 293


>SPAC1142.08 |fhl1|SPAC8C9.01|fork head transcription factor Fhl1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 743

 Score = 28.7 bits (61), Expect = 1.9
 Identities = 20/90 (22%), Positives = 42/90 (46%), Gaps = 3/90 (3%)

Query: 25  NSTDVREQPKASPVHSLQTKNRFLLKIQDLFNGMQVYEDEDLLAHARDQIPLVTLQLMAL 84
           N+T + E P A+  H+L + N+    +    + +Q    +  +    D+ P+ T   ++ 
Sbjct: 193 NATSIIEHPDAANAHTLASLNQPPKHLTVSPSSIQRLSPQPYVRPTSDERPIETDSSVSA 252

Query: 85  DRVREQQKKIKMGEIKANDLPFDTALLMEL 114
            +V    +++K G+   +  P DT L  +L
Sbjct: 253 PKVANHDEELKQGK---STSPSDTVLHPDL 279


>SPAP27G11.05c |vps41||vacuolar protein sorting-associated protein
           Vps41|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 886

 Score = 26.6 bits (56), Expect = 7.5
 Identities = 17/66 (25%), Positives = 31/66 (46%), Gaps = 1/66 (1%)

Query: 38  VHSLQTKNRFLLKIQDLFNGMQVYEDEDLLAHARDQIPLVTLQLMALDRVREQQKKIKMG 97
           V   ++KN FL  +  L N    + DE L  + R +IP++   L     +R +  +I   
Sbjct: 791 VKGKRSKNIFLTNLVKLDNPFNSFGDEQLDYNYRKRIPMI-YDLRTKKYIRPEDVRIDTD 849

Query: 98  EIKAND 103
           ++  +D
Sbjct: 850 DVFKDD 855


>SPCC1020.13c ||SPCC14G10.05|phospholipase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 669

 Score = 26.6 bits (56), Expect = 7.5
 Identities = 15/42 (35%), Positives = 19/42 (45%), Gaps = 2/42 (4%)

Query: 207 YVYDVTDHVWCEVFDYDSNQWLHVDPCEAKLN--TPLMYSHG 246
           Y YD  D   C   D   N + H+DP   +LN    L +S G
Sbjct: 480 YTYDGYDRYGCLAVDSFYNIYNHLDPVAMRLNPTVDLSFSKG 521


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.323    0.136    0.429 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,142,953
Number of Sequences: 5004
Number of extensions: 88728
Number of successful extensions: 178
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 174
Number of HSP's gapped (non-prelim): 4
length of query: 472
length of database: 2,362,478
effective HSP length: 75
effective length of query: 397
effective length of database: 1,987,178
effective search space: 788909666
effective search space used: 788909666
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 55 (26.2 bits)