Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001982-TA|BGIBMGA001982-PA|IPR002931|Transglutaminase-
like
(472 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_0482 + 18589573-18589728,18589889-18590065,18590518-185906... 93 3e-19
05_05_0270 - 23728986-23729267,23729575-23730120,23730207-237305... 31 2.0
10_05_0072 + 8839223-8839720 31 2.6
09_06_0287 + 22047404-22048409,22048754-22049967 30 4.6
02_01_0218 + 1433310-1435620,1435672-1435951,1436461-1436524,143... 30 4.6
08_01_0041 - 290333-290698,290854-291861 29 6.1
06_03_1258 + 28796643-28798169 29 8.0
>07_03_0482 +
18589573-18589728,18589889-18590065,18590518-18590688,
18590913-18591029,18591614-18591742,18592210-18592311,
18592412-18592498,18592585-18592638,18594880-18595016,
18595181-18595235,18596133-18596188,18596275-18596334,
18596442-18596529,18596634-18597371,18597451-18597511,
18598301-18598403,18599180-18599311,18599393-18599477
Length = 835
Score = 93.5 bits (222), Expect = 3e-19
Identities = 43/98 (43%), Positives = 59/98 (60%), Gaps = 1/98 (1%)
Query: 204 DTRYVYDVTDHVWCEVFDYDSNQWLHVDPCEAKLNTPLMYSHGWGKRLSYVIAFSRDDLQ 263
D + D TDHVW E F +W+H+DPCE + PL+Y GW K+L YVIA S+D ++
Sbjct: 392 DPYKILDFTDHVWTECFSNLYGRWMHLDPCEGVYDNPLLYEKGWNKKLDYVIAISKDGVR 451
Query: 264 DVTWRYTTNHKEVLKYRYLCTETELISTIMTLRKHKQR 301
DVT RYT EVL R + +E + +S I++ K R
Sbjct: 452 DVTKRYTRKWHEVLSRRIITSE-DTVSAILSSITGKYR 488
>05_05_0270 -
23728986-23729267,23729575-23730120,23730207-23730561,
23731147-23731442,23731665-23731714,23731802-23731904,
23732059-23732148,23732328-23732384,23732571-23732618,
23732725-23732753,23732940-23733087
Length = 667
Score = 31.1 bits (67), Expect = 2.0
Identities = 18/59 (30%), Positives = 26/59 (44%), Gaps = 5/59 (8%)
Query: 324 VERRACDGAETAPLPGWHAAVLHAA-----NVFRKVEPDWLQSYIAREEGEDFGSISWA 377
V R + P W AAVL A N+ +E W+QS + + G + G+I A
Sbjct: 567 VRNRVLQKLQHGPEASWRAAVLPAGLLAFQNLVHPIEAQWIQSGLGHDYGVNHGAIKKA 625
>10_05_0072 + 8839223-8839720
Length = 165
Score = 30.7 bits (66), Expect = 2.6
Identities = 15/62 (24%), Positives = 34/62 (54%), Gaps = 2/62 (3%)
Query: 314 RTLEELVQMMVERRACDGAETAPLPGWHAAVLHAANVFRKVEPDWLQSYIAREEG--EDF 371
+ + E + ++++ +G + + G A +LH+A+ + K++ + YI + EG +DF
Sbjct: 17 KVVAEATMSVFQQKSVEGVDKKEVAGAAADLLHSASTYGKLDDKPVGQYIDKAEGYLKDF 76
Query: 372 GS 373
S
Sbjct: 77 SS 78
>09_06_0287 + 22047404-22048409,22048754-22049967
Length = 739
Score = 29.9 bits (64), Expect = 4.6
Identities = 18/51 (35%), Positives = 30/51 (58%), Gaps = 2/51 (3%)
Query: 288 LISTIMTLRKHKQRDVTEARRRYLAKRTLEELVQMMVERRACDGAETAPLP 338
+I I +RK K+R + R++Y K+ +L+Q +V +RA D AE +P
Sbjct: 353 VIMAIFIIRKQKRRRAKKIRQKYF-KQNRGQLLQQLVAQRA-DIAERMIIP 401
>02_01_0218 +
1433310-1435620,1435672-1435951,1436461-1436524,
1436557-1436562
Length = 886
Score = 29.9 bits (64), Expect = 4.6
Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 3/46 (6%)
Query: 185 GRCGEWANCFTLLCRALGYD-TRYVYDVTDHVWCEVFDYD-SNQWL 228
GR N F LCR GY+ R+ +D+ H +C+ D D + +W+
Sbjct: 808 GRMDSACNLFERLCRK-GYEPNRWTFDIMVHGFCKNSDRDEAERWM 852
>08_01_0041 - 290333-290698,290854-291861
Length = 457
Score = 29.5 bits (63), Expect = 6.1
Identities = 14/46 (30%), Positives = 24/46 (52%)
Query: 76 LVTLQLMALDRVREQQKKIKMGEIKANDLPFDTALLMELLDWFKHD 121
L ++ + R R+Q+ ++ M I + T L ELL+WF +D
Sbjct: 141 LTNKKVRSYSRARQQEVRLVMARINEAAVARTTVDLSELLNWFTND 186
>06_03_1258 + 28796643-28798169
Length = 508
Score = 29.1 bits (62), Expect = 8.0
Identities = 42/170 (24%), Positives = 63/170 (37%), Gaps = 15/170 (8%)
Query: 302 DVTEARRRYLAKRTLEELVQMMVERRACDGAETAPLPGWHAAVLHAANVFRKVEPDWLQS 361
++ EA + YL R L M + + A A LPG HA + FR V W S
Sbjct: 69 ELYEAAQLYLGARCLATAPAMHLHKAHGAAAAVASLPGSHA----TRDAFRGVRVLW-TS 123
Query: 362 YIAREEGEDFGSISWAFAASEELTCASLSIKVRTALYESGRIDWTVKFDDENPTTVTLSD 421
+ FG S++ ++S + R E R D V D P + +
Sbjct: 124 QLDGNASSSFGG-SFSSSSSRRWAPPPIDGWQRCLRLEFRRRDRDVVRDAYIPFVL---E 179
Query: 422 KPTKFARKFRKVIIKAELSG------GDGPVRWQHAQLFRQHTYSKRSSF 465
+ K R+ + G GDG H L++ H +S S+F
Sbjct: 180 EAAALRAKLRERKLYTNNGGGGGCYYGDGGAMDDHQMLWKAHKFSHPSTF 229
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.323 0.136 0.429
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,974,093
Number of Sequences: 37544
Number of extensions: 578823
Number of successful extensions: 1124
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1119
Number of HSP's gapped (non-prelim): 8
length of query: 472
length of database: 14,793,348
effective HSP length: 85
effective length of query: 387
effective length of database: 11,602,108
effective search space: 4490015796
effective search space used: 4490015796
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 62 (29.1 bits)
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