Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001982-TA|BGIBMGA001982-PA|IPR002931|Transglutaminase-
like
(472 letters)
Database: human
224,733 sequences; 73,234,838 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC017220-1|AAH17220.1| 481|Homo sapiens NGLY1 protein protein. 218 3e-56
BC007226-1|AAH07226.1| 654|Homo sapiens N-glycanase 1 protein. 218 3e-56
AF250924-1|AAF74720.2| 654|Homo sapiens PNGase protein. 218 3e-56
BC000963-1|AAH00963.1| 633|Homo sapiens Similar to peptide N-gl... 128 6e-29
AB209549-1|BAD92786.1| 225|Homo sapiens N-glycanase 1 variant p... 113 1e-24
X65024-1|CAA46158.1| 823|Homo sapiens Xeroderma Pigmentosum Gro... 33 2.9
D21089-1|BAA04651.1| 940|Homo sapiens XP-C repair complementing... 33 2.9
BC016620-1|AAH16620.1| 940|Homo sapiens xeroderma pigmentosum, ... 33 2.9
AY131066-1|AAM77801.1| 940|Homo sapiens xeroderma pigmentosum, ... 33 2.9
AK222844-1|BAD96564.1| 872|Homo sapiens xeroderma pigmentosum, ... 33 2.9
AF261901-1|AAF87574.1| 940|Homo sapiens xeroderma pigmentosum g... 33 2.9
BC050722-1|AAH50722.1| 448|Homo sapiens CEP170 protein protein. 31 8.8
AL606534-4|CAI12944.1| 1584|Homo sapiens centrosomal protein 170... 31 8.8
AL606534-3|CAI12945.1| 1460|Homo sapiens centrosomal protein 170... 31 8.8
AL606534-2|CAI12943.1| 1486|Homo sapiens centrosomal protein 170... 31 8.8
AL606534-1|CAI12942.1| 1557|Homo sapiens centrosomal protein 170... 31 8.8
AB022659-1|BAA83380.1| 1460|Homo sapiens KARP-1-binding protein ... 31 8.8
AB022658-1|BAA83379.1| 1486|Homo sapiens KARP-1-binding protein ... 31 8.8
AB022657-1|BAA83378.1| 1584|Homo sapiens KARP-1-binding protein ... 31 8.8
AB007939-1|BAA32315.2| 1472|Homo sapiens KIAA0470 protein protein. 31 8.8
>BC017220-1|AAH17220.1| 481|Homo sapiens NGLY1 protein protein.
Length = 481
Score = 218 bits (533), Expect = 3e-56
Identities = 118/297 (39%), Positives = 169/297 (56%), Gaps = 13/297 (4%)
Query: 31 EQPKASPVHSLQTKNRFLLKIQDLFNGMQVYEDEDLLAHARDQIPLVTLQLMALDRVREQ 90
+ P AS V + + L +Q + VYE+ L A IP+ L+ + +++ +
Sbjct: 81 DPPSASTVAA---DSAILEVLQSNIQHVLVYENPALQEKALACIPVQELKRKSQEKL-SR 136
Query: 91 QKKIKMGEIKANDLPFDTALLMELLDWFKHDFFKWVDKPDCDLCGERTVNHENAIMTIEG 150
+K+ G I +D F LL+ELL WFK +FF WV+ C CG +T + + +++ +
Sbjct: 137 ARKLDKG-INISDEDF---LLLELLHWFKEEFFHWVNNVLCSKCGGQTRSRDRSLLPSDD 192
Query: 151 E----TCRVELYQCTVCEGGTAMFPRYXXXXXXXXXXSGRCGEWANCFTLLCRALGYDTR 206
E VE + C C+ FPRY GRCGEWANCFTL CRA+G++ R
Sbjct: 193 ELKWGAKEVEDHYCDACQFSNR-FPRYNNPEKLLETRCGRCGEWANCFTLCCRAVGFEAR 251
Query: 207 YVYDVTDHVWCEVFDYDSNQWLHVDPCEAKLNTPLMYSHGWGKRLSYVIAFSRDDLQDVT 266
YV+D TDHVW EV+ +WLH D CE + PL+Y GWGK+LSYVIAFS+D++ DVT
Sbjct: 252 YVWDYTDHVWTEVYSPSQQRWLHCDACEDVCDKPLLYEIGWGKKLSYVIAFSKDEVVDVT 311
Query: 267 WRYTTNHKEVLKYRYLCTETELISTIMTLRKHKQRDVTEARRRYLAKRTLEELVQMM 323
WRY+ H+EV+ R E L TI L K +Q ++E RR+ L +R + ELV+ +
Sbjct: 312 WRYSCKHEEVIARRTKVKEALLRDTINGLNKQRQLFLSENRRKELLQRIIVELVEFI 368
>BC007226-1|AAH07226.1| 654|Homo sapiens N-glycanase 1 protein.
Length = 654
Score = 218 bits (533), Expect = 3e-56
Identities = 118/297 (39%), Positives = 169/297 (56%), Gaps = 13/297 (4%)
Query: 31 EQPKASPVHSLQTKNRFLLKIQDLFNGMQVYEDEDLLAHARDQIPLVTLQLMALDRVREQ 90
+ P AS V + + L +Q + VYE+ L A IP+ L+ + +++ +
Sbjct: 158 DPPSASTVAA---DSAILEVLQSNIQHVLVYENPALQEKALACIPVQELKRKSQEKL-SR 213
Query: 91 QKKIKMGEIKANDLPFDTALLMELLDWFKHDFFKWVDKPDCDLCGERTVNHENAIMTIEG 150
+K+ G I +D F LL+ELL WFK +FF WV+ C CG +T + + +++ +
Sbjct: 214 ARKLDKG-INISDEDF---LLLELLHWFKEEFFHWVNNVLCSKCGGQTRSRDRSLLPSDD 269
Query: 151 E----TCRVELYQCTVCEGGTAMFPRYXXXXXXXXXXSGRCGEWANCFTLLCRALGYDTR 206
E VE + C C+ FPRY GRCGEWANCFTL CRA+G++ R
Sbjct: 270 ELKWGAKEVEDHYCDACQFSNR-FPRYNNPEKLLETRCGRCGEWANCFTLCCRAVGFEAR 328
Query: 207 YVYDVTDHVWCEVFDYDSNQWLHVDPCEAKLNTPLMYSHGWGKRLSYVIAFSRDDLQDVT 266
YV+D TDHVW EV+ +WLH D CE + PL+Y GWGK+LSYVIAFS+D++ DVT
Sbjct: 329 YVWDYTDHVWTEVYSPSQQRWLHCDACEDVCDKPLLYEIGWGKKLSYVIAFSKDEVVDVT 388
Query: 267 WRYTTNHKEVLKYRYLCTETELISTIMTLRKHKQRDVTEARRRYLAKRTLEELVQMM 323
WRY+ H+EV+ R E L TI L K +Q ++E RR+ L +R + ELV+ +
Sbjct: 389 WRYSCKHEEVIARRTKVKEALLRDTINGLNKQRQLFLSENRRKELLQRIIVELVEFI 445
Score = 91.5 bits (217), Expect = 6e-18
Identities = 48/123 (39%), Positives = 69/123 (56%), Gaps = 4/123 (3%)
Query: 337 LPGWHAAVLHAANVFRKVEPDWLQSYIAREEGEDFGSISWAF-AASEELTCASLSIKVRT 395
+ GW V ++FRKVE DW Y+AR+EG F ISW F S L S+SI+ +
Sbjct: 514 ISGWENGVWKMESIFRKVETDWHMVYLARKEGSSFAYISWKFECGSVGLKVDSISIRTSS 573
Query: 396 ALYESGRIDWTVKFDDENPTTVTLSDKPTKFA--RKFRKVIIKAELSGGDGPVRWQHAQL 453
+++G ++W ++ D +T + +A +VI++AELS GDG V WQH QL
Sbjct: 574 QTFQTGTVEWKLR-SDTAQVELTGDNSLHSYADFSGATEVILEAELSRGDGDVAWQHTQL 632
Query: 454 FRQ 456
FRQ
Sbjct: 633 FRQ 635
>AF250924-1|AAF74720.2| 654|Homo sapiens PNGase protein.
Length = 654
Score = 218 bits (533), Expect = 3e-56
Identities = 118/297 (39%), Positives = 169/297 (56%), Gaps = 13/297 (4%)
Query: 31 EQPKASPVHSLQTKNRFLLKIQDLFNGMQVYEDEDLLAHARDQIPLVTLQLMALDRVREQ 90
+ P AS V + + L +Q + VYE+ L A IP+ L+ + +++ +
Sbjct: 158 DPPSASTVAA---DSAILEVLQSNIQHVLVYENPALQEKALACIPVQELKRKSQEKL-SR 213
Query: 91 QKKIKMGEIKANDLPFDTALLMELLDWFKHDFFKWVDKPDCDLCGERTVNHENAIMTIEG 150
+K+ G I +D F LL+ELL WFK +FF WV+ C CG +T + + +++ +
Sbjct: 214 ARKLDKG-INISDEDF---LLLELLHWFKEEFFHWVNNVLCSKCGGQTRSRDRSLLPSDD 269
Query: 151 E----TCRVELYQCTVCEGGTAMFPRYXXXXXXXXXXSGRCGEWANCFTLLCRALGYDTR 206
E VE + C C+ FPRY GRCGEWANCFTL CRA+G++ R
Sbjct: 270 ELKWGAKEVEDHYCDACQFSNR-FPRYNNPEKLLETRCGRCGEWANCFTLCCRAVGFEAR 328
Query: 207 YVYDVTDHVWCEVFDYDSNQWLHVDPCEAKLNTPLMYSHGWGKRLSYVIAFSRDDLQDVT 266
YV+D TDHVW EV+ +WLH D CE + PL+Y GWGK+LSYVIAFS+D++ DVT
Sbjct: 329 YVWDYTDHVWTEVYSPSQQRWLHCDACEDVCDKPLLYEIGWGKKLSYVIAFSKDEVVDVT 388
Query: 267 WRYTTNHKEVLKYRYLCTETELISTIMTLRKHKQRDVTEARRRYLAKRTLEELVQMM 323
WRY+ H+EV+ R E L TI L K +Q ++E RR+ L +R + ELV+ +
Sbjct: 389 WRYSCKHEEVIARRTKVKEALLRDTINGLNKQRQLFLSENRRKELLQRIIVELVEFI 445
Score = 91.5 bits (217), Expect = 6e-18
Identities = 48/123 (39%), Positives = 69/123 (56%), Gaps = 4/123 (3%)
Query: 337 LPGWHAAVLHAANVFRKVEPDWLQSYIAREEGEDFGSISWAF-AASEELTCASLSIKVRT 395
+ GW V ++FRKVE DW Y+AR+EG F ISW F S L S+SI+ +
Sbjct: 514 ISGWENGVWKMESIFRKVETDWHMVYLARKEGSSFAYISWKFECGSVGLKVDSISIRTSS 573
Query: 396 ALYESGRIDWTVKFDDENPTTVTLSDKPTKFA--RKFRKVIIKAELSGGDGPVRWQHAQL 453
+++G ++W ++ D +T + +A +VI++AELS GDG V WQH QL
Sbjct: 574 QTFQTGTVEWKLR-SDTAQVELTGDNSLHSYADFSGATEVILEAELSRGDGDVAWQHTQL 632
Query: 454 FRQ 456
FRQ
Sbjct: 633 FRQ 635
>BC000963-1|AAH00963.1| 633|Homo sapiens Similar to peptide
N-glycanase homolog (S.cerevisiae) protein.
Length = 633
Score = 128 bits (308), Expect = 6e-29
Identities = 96/297 (32%), Positives = 144/297 (48%), Gaps = 31/297 (10%)
Query: 31 EQPKASPVHSLQTKNRFLLKIQDLFNGMQVYEDEDLLAHARDQIPLVTLQLMALDRVREQ 90
+ P AS V + + L +Q + VYE+ L A IP+ L+ + +++ +
Sbjct: 155 DPPSASTVAA---DSAILEVLQSNIQHVLVYENPALQEKALACIPVQELKRKSQEKL-SR 210
Query: 91 QKKIKMGEIKANDLPFDTALLMELLDWFKHDFFKWVDKPDCDLCGERTVNHENAIMTIEG 150
+K+ G I +D F LL+ELL WFK +FF WV+ C CG +T + + +++ +
Sbjct: 211 ARKLDKG-INISDEDF---LLLELLHWFKEEFFHWVNNVLCSKCGGQTRSRDRSLLPSDD 266
Query: 151 E----TCRVELYQCTVCEGGTAMFPRYXXXXXXXXXXSGRCGEWANCFTLLCRALGYDTR 206
E VE + C C+ FPRY GRCGEWANCFTL CRA+G++ R
Sbjct: 267 ELKWGAKEVEDHYCDACQFSNR-FPRYNNPEKLLETRCGRCGEWANCFTLCCRAVGFEAR 325
Query: 207 YVYDVTDHVWCEVFDYDSNQWLHVDPCEAKLNTPLMYSHGWGKRLSYVIAFSRDDLQDVT 266
YV+D T + L + + T L S KR + + DVT
Sbjct: 326 YVWDYT--------ELQRTLSLKLTTLKEIGKTFLRIS----KRQKLI------QVVDVT 367
Query: 267 WRYTTNHKEVLKYRYLCTETELISTIMTLRKHKQRDVTEARRRYLAKRTLEELVQMM 323
WRY+ H+EV+ R E L TI L K +Q ++E RR+ L +R + ELV+ +
Sbjct: 368 WRYSCKHEEVIARRTKVKEALLRDTINGLNKQRQLFLSENRRKELLQRIIVELVEFI 424
Score = 91.5 bits (217), Expect = 6e-18
Identities = 48/123 (39%), Positives = 69/123 (56%), Gaps = 4/123 (3%)
Query: 337 LPGWHAAVLHAANVFRKVEPDWLQSYIAREEGEDFGSISWAF-AASEELTCASLSIKVRT 395
+ GW V ++FRKVE DW Y+AR+EG F ISW F S L S+SI+ +
Sbjct: 493 ISGWENGVWKMESIFRKVETDWHMVYLARKEGSSFAYISWKFECGSVGLKVDSISIRTSS 552
Query: 396 ALYESGRIDWTVKFDDENPTTVTLSDKPTKFA--RKFRKVIIKAELSGGDGPVRWQHAQL 453
+++G ++W ++ D +T + +A +VI++AELS GDG V WQH QL
Sbjct: 553 QTFQTGTVEWKLR-SDTAQVELTGDNSLHSYADFSGATEVILEAELSRGDGDVAWQHTQL 611
Query: 454 FRQ 456
FRQ
Sbjct: 612 FRQ 614
>AB209549-1|BAD92786.1| 225|Homo sapiens N-glycanase 1 variant
protein.
Length = 225
Score = 113 bits (272), Expect = 1e-24
Identities = 66/196 (33%), Positives = 97/196 (49%), Gaps = 4/196 (2%)
Query: 264 DVTWRYTTNHKEVLKYRYLCTETELISTIMTLRKHKQRDVTEARRRYLAKRTLEELVQMM 323
DVTWRY+ H+EV+ R E L TI L K ++ + + L ++
Sbjct: 12 DVTWRYSCKHEEVIARRTKVKEALLRDTINGLNKQRKETLFIPCENEKISKQLHLCYNIV 71
Query: 324 VERRACDGAETAPLPGWHAAVLHAANVFRKVEPDWLQSYIAREEGEDFGSISWAF-AASE 382
+R + GW V ++FRKVE DW Y+AR+EG F ISW F S
Sbjct: 72 KDRYVRVSNNNQTISGWENGVWKMESIFRKVETDWHMVYLARKEGSSFAYISWKFECGSV 131
Query: 383 ELTCASLSIKVRTALYESGRIDWTVKFDDENPTTVTLSDKPTKFA--RKFRKVIIKAELS 440
L S+SI+ + +++G ++W ++ D +T + +A +VI++AELS
Sbjct: 132 GLKVDSISIRTSSQTFQTGTVEWKLR-SDTAQVELTGDNSLHSYADFSGATEVILEAELS 190
Query: 441 GGDGPVRWQHAQLFRQ 456
GDG V WQH QLFRQ
Sbjct: 191 RGDGDVAWQHTQLFRQ 206
>X65024-1|CAA46158.1| 823|Homo sapiens Xeroderma Pigmentosum Group
C Complementing factor protein.
Length = 823
Score = 32.7 bits (71), Expect = 2.9
Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Query: 216 WCEVFDYDSNQWLHVDPCEAKLNTPLMYSHGWGKRLSYVIAFSRDD-LQDVTWRY 269
W EVF +W+ VD + PL K ++YV+ D ++DVT RY
Sbjct: 414 WLEVFCEQEEKWVCVDCVHGVVGQPLTCYKYATKPMTYVVGIDSDGWVRDVTQRY 468
>D21089-1|BAA04651.1| 940|Homo sapiens XP-C repair complementing
protein (p125) protein.
Length = 940
Score = 32.7 bits (71), Expect = 2.9
Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Query: 216 WCEVFDYDSNQWLHVDPCEAKLNTPLMYSHGWGKRLSYVIAFSRDD-LQDVTWRY 269
W EVF +W+ VD + PL K ++YV+ D ++DVT RY
Sbjct: 531 WLEVFCEQEEKWVCVDCVHGVVGQPLTCYKYATKPMTYVVGIDSDGWVRDVTQRY 585
>BC016620-1|AAH16620.1| 940|Homo sapiens xeroderma pigmentosum,
complementation group C protein.
Length = 940
Score = 32.7 bits (71), Expect = 2.9
Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Query: 216 WCEVFDYDSNQWLHVDPCEAKLNTPLMYSHGWGKRLSYVIAFSRDD-LQDVTWRY 269
W EVF +W+ VD + PL K ++YV+ D ++DVT RY
Sbjct: 531 WLEVFCEQEEKWVCVDCVHGVVGQPLTCYKYATKPMTYVVGIDSDGWVRDVTQRY 585
>AY131066-1|AAM77801.1| 940|Homo sapiens xeroderma pigmentosum,
complementation group C protein.
Length = 940
Score = 32.7 bits (71), Expect = 2.9
Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Query: 216 WCEVFDYDSNQWLHVDPCEAKLNTPLMYSHGWGKRLSYVIAFSRDD-LQDVTWRY 269
W EVF +W+ VD + PL K ++YV+ D ++DVT RY
Sbjct: 531 WLEVFCEQEEKWVCVDCVHGVVGQPLTCYKYATKPMTYVVGIDSDGWVRDVTQRY 585
>AK222844-1|BAD96564.1| 872|Homo sapiens xeroderma pigmentosum,
complementation group C variant protein.
Length = 872
Score = 32.7 bits (71), Expect = 2.9
Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Query: 216 WCEVFDYDSNQWLHVDPCEAKLNTPLMYSHGWGKRLSYVIAFSRDD-LQDVTWRY 269
W EVF +W+ VD + PL K ++YV+ D ++DVT RY
Sbjct: 463 WLEVFCEQEEKWVCVDCVHGVVGQPLTCYKYATKPMTYVVGIDSDGWVRDVTQRY 517
>AF261901-1|AAF87574.1| 940|Homo sapiens xeroderma pigmentosum
group C protein protein.
Length = 940
Score = 32.7 bits (71), Expect = 2.9
Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Query: 216 WCEVFDYDSNQWLHVDPCEAKLNTPLMYSHGWGKRLSYVIAFSRDD-LQDVTWRY 269
W EVF +W+ VD + PL K ++YV+ D ++DVT RY
Sbjct: 531 WLEVFCEQEEKWVCVDCVHGVVGQPLTCYKYATKPMTYVVGIDSDGWVRDVTQRY 585
>BC050722-1|AAH50722.1| 448|Homo sapiens CEP170 protein protein.
Length = 448
Score = 31.1 bits (67), Expect = 8.8
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 400 SGRIDWTVKFDDENPTTVTLSDKPTKF 426
+G +T++FDD P VT+ D TKF
Sbjct: 275 AGHASFTIEFDDSTPGKVTIRDHVTKF 301
>AL606534-4|CAI12944.1| 1584|Homo sapiens centrosomal protein 170kDa
protein.
Length = 1584
Score = 31.1 bits (67), Expect = 8.8
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 400 SGRIDWTVKFDDENPTTVTLSDKPTKF 426
+G +T++FDD P VT+ D TKF
Sbjct: 275 AGHASFTIEFDDSTPGKVTIRDHVTKF 301
>AL606534-3|CAI12945.1| 1460|Homo sapiens centrosomal protein 170kDa
protein.
Length = 1460
Score = 31.1 bits (67), Expect = 8.8
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 400 SGRIDWTVKFDDENPTTVTLSDKPTKF 426
+G +T++FDD P VT+ D TKF
Sbjct: 275 AGHASFTIEFDDSTPGKVTIRDHVTKF 301
>AL606534-2|CAI12943.1| 1486|Homo sapiens centrosomal protein 170kDa
protein.
Length = 1486
Score = 31.1 bits (67), Expect = 8.8
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 400 SGRIDWTVKFDDENPTTVTLSDKPTKF 426
+G +T++FDD P VT+ D TKF
Sbjct: 275 AGHASFTIEFDDSTPGKVTIRDHVTKF 301
>AL606534-1|CAI12942.1| 1557|Homo sapiens centrosomal protein 170kDa
protein.
Length = 1557
Score = 31.1 bits (67), Expect = 8.8
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 400 SGRIDWTVKFDDENPTTVTLSDKPTKF 426
+G +T++FDD P VT+ D TKF
Sbjct: 176 AGHASFTIEFDDSTPGKVTIRDHVTKF 202
>AB022659-1|BAA83380.1| 1460|Homo sapiens KARP-1-binding protein 3
protein.
Length = 1460
Score = 31.1 bits (67), Expect = 8.8
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 400 SGRIDWTVKFDDENPTTVTLSDKPTKF 426
+G +T++FDD P VT+ D TKF
Sbjct: 275 AGHASFTIEFDDSTPGKVTIRDHVTKF 301
>AB022658-1|BAA83379.1| 1486|Homo sapiens KARP-1-binding protein 2
(KAB2) protein.
Length = 1486
Score = 31.1 bits (67), Expect = 8.8
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 400 SGRIDWTVKFDDENPTTVTLSDKPTKF 426
+G +T++FDD P VT+ D TKF
Sbjct: 275 AGHASFTIEFDDSTPGKVTIRDHVTKF 301
>AB022657-1|BAA83378.1| 1584|Homo sapiens KARP-1-binding protein 1
(KAB1) protein.
Length = 1584
Score = 31.1 bits (67), Expect = 8.8
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 400 SGRIDWTVKFDDENPTTVTLSDKPTKF 426
+G +T++FDD P VT+ D TKF
Sbjct: 275 AGHASFTIEFDDSTPGKVTIRDHVTKF 301
>AB007939-1|BAA32315.2| 1472|Homo sapiens KIAA0470 protein protein.
Length = 1472
Score = 31.1 bits (67), Expect = 8.8
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 400 SGRIDWTVKFDDENPTTVTLSDKPTKF 426
+G +T++FDD P VT+ D TKF
Sbjct: 287 AGHASFTIEFDDSTPGKVTIRDHVTKF 313
Database: human
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 73,234,838
Number of sequences in database: 224,733
Lambda K H
0.323 0.136 0.429
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 69,908,760
Number of Sequences: 224733
Number of extensions: 2936828
Number of successful extensions: 7947
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 7911
Number of HSP's gapped (non-prelim): 33
length of query: 472
length of database: 73,234,838
effective HSP length: 93
effective length of query: 379
effective length of database: 52,334,669
effective search space: 19834839551
effective search space used: 19834839551
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 67 (31.1 bits)
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