GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001982-TA|BGIBMGA001982-PA|IPR002931|Transglutaminase-
like
         (472 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81552-7|CAB04487.2|  606|Caenorhabditis elegans Hypothetical pr...   181   1e-45
AL117201-5|CAB57916.1|  606|Caenorhabditis elegans Hypothetical ...   181   1e-45
AF250925-1|AAF74721.1|  542|Caenorhabditis elegans PNGase protein.    181   1e-45
AC006603-6|ABB51200.1|  534|Caenorhabditis elegans Hypothetical ...    33   0.44 
AL117203-3|CAB55101.1|  448|Caenorhabditis elegans Hypothetical ...    32   0.76 
AC024211-5|AAF36063.2| 1119|Caenorhabditis elegans Hypothetical ...    31   2.3  
AC024758-3|AAF59456.3| 1037|Caenorhabditis elegans Hypothetical ...    29   5.4  

>Z81552-7|CAB04487.2|  606|Caenorhabditis elegans Hypothetical
           protein F56G4.5 protein.
          Length = 606

 Score =  181 bits (440), Expect = 1e-45
 Identities = 91/225 (40%), Positives = 125/225 (55%), Gaps = 8/225 (3%)

Query: 107 DTALLMELLDWFKHDFFKWVDKPDCDLCGER-TVNHENAIMTIE----GETCRVELYQCT 161
           + A+L +LL WFK  FF W D+P C  C  + + +      T E    G   RVE+Y C 
Sbjct: 167 EKAILKDLLHWFKTQFFTWFDRPTCPKCTLKCSTDGLQGTPTREEQKEGGASRVEVYICD 226

Query: 162 VCEGGTAM-FPRYXXXXXXXXXXSGRCGEWANCFTLLCRALGYDTRYVYDVTDHVWCEVF 220
            C   T M FPRY          +GRCGEWANCF LL  AL  ++R++YD TDHVW EV+
Sbjct: 227 GCN--TEMRFPRYNNPAKLLQTRTGRCGEWANCFGLLLAALNLESRFIYDTTDHVWNEVY 284

Query: 221 DYDSNQWLHVDPCEAKLNTPLMYSHGWGKRLSYVIAFSRDDLQDVTWRYTTNHKEVLKYR 280
                +W HVDPCE  ++ PL+Y+ GWGK L Y I +  D + DVTWRY  + K+++  R
Sbjct: 285 LLAEQRWCHVDPCENTMDRPLLYTRGWGKTLGYCIGYGSDHVVDVTWRYIWDSKKLVTQR 344

Query: 281 YLCTETELISTIMTLRKHKQRDVTEARRRYLAKRTLEELVQMMVE 325
               +    + +  L   +    TE R+R LA R + EL++MM +
Sbjct: 345 NEVRQPVFENFLSKLNSRQAEGQTEPRKRELAVRRVCELMEMMAQ 389



 Score = 48.4 bits (110), Expect = 1e-05
 Identities = 37/124 (29%), Positives = 57/124 (45%), Gaps = 5/124 (4%)

Query: 336 PLPGWHAAVLHAANVFRKVEPDWLQSYIAREEGEDFGSISWAFAASEELTCASLSIKVRT 395
           P  G+ A      NV R  E DW  +Y+ R+ G+  G+ISW F   + L  +   I++R 
Sbjct: 462 PEIGFSAQAFELENVQRVEETDWNMTYLCRKRGDAPGNISWHFDL-KSLKKSIEKIEIRM 520

Query: 396 A---LYESGRIDWTVKFDDE-NPTTVTLSDKPTKFARKFRKVIIKAELSGGDGPVRWQHA 451
           A    +E G+        D      +  S    +  +    + I A LSGG+G + +Q A
Sbjct: 521 AGIQKFEKGKAMAIACLGDSCMRLPIDCSALTIEDPKNAEILKITATLSGGEGAIGFQQA 580

Query: 452 QLFR 455
           Q+FR
Sbjct: 581 QIFR 584


>AL117201-5|CAB57916.1|  606|Caenorhabditis elegans Hypothetical
           protein F56G4.5 protein.
          Length = 606

 Score =  181 bits (440), Expect = 1e-45
 Identities = 91/225 (40%), Positives = 125/225 (55%), Gaps = 8/225 (3%)

Query: 107 DTALLMELLDWFKHDFFKWVDKPDCDLCGER-TVNHENAIMTIE----GETCRVELYQCT 161
           + A+L +LL WFK  FF W D+P C  C  + + +      T E    G   RVE+Y C 
Sbjct: 167 EKAILKDLLHWFKTQFFTWFDRPTCPKCTLKCSTDGLQGTPTREEQKEGGASRVEVYICD 226

Query: 162 VCEGGTAM-FPRYXXXXXXXXXXSGRCGEWANCFTLLCRALGYDTRYVYDVTDHVWCEVF 220
            C   T M FPRY          +GRCGEWANCF LL  AL  ++R++YD TDHVW EV+
Sbjct: 227 GCN--TEMRFPRYNNPAKLLQTRTGRCGEWANCFGLLLAALNLESRFIYDTTDHVWNEVY 284

Query: 221 DYDSNQWLHVDPCEAKLNTPLMYSHGWGKRLSYVIAFSRDDLQDVTWRYTTNHKEVLKYR 280
                +W HVDPCE  ++ PL+Y+ GWGK L Y I +  D + DVTWRY  + K+++  R
Sbjct: 285 LLAEQRWCHVDPCENTMDRPLLYTRGWGKTLGYCIGYGSDHVVDVTWRYIWDSKKLVTQR 344

Query: 281 YLCTETELISTIMTLRKHKQRDVTEARRRYLAKRTLEELVQMMVE 325
               +    + +  L   +    TE R+R LA R + EL++MM +
Sbjct: 345 NEVRQPVFENFLSKLNSRQAEGQTEPRKRELAVRRVCELMEMMAQ 389



 Score = 48.4 bits (110), Expect = 1e-05
 Identities = 37/124 (29%), Positives = 57/124 (45%), Gaps = 5/124 (4%)

Query: 336 PLPGWHAAVLHAANVFRKVEPDWLQSYIAREEGEDFGSISWAFAASEELTCASLSIKVRT 395
           P  G+ A      NV R  E DW  +Y+ R+ G+  G+ISW F   + L  +   I++R 
Sbjct: 462 PEIGFSAQAFELENVQRVEETDWNMTYLCRKRGDAPGNISWHFDL-KSLKKSIEKIEIRM 520

Query: 396 A---LYESGRIDWTVKFDDE-NPTTVTLSDKPTKFARKFRKVIIKAELSGGDGPVRWQHA 451
           A    +E G+        D      +  S    +  +    + I A LSGG+G + +Q A
Sbjct: 521 AGIQKFEKGKAMAIACLGDSCMRLPIDCSALTIEDPKNAEILKITATLSGGEGAIGFQQA 580

Query: 452 QLFR 455
           Q+FR
Sbjct: 581 QIFR 584


>AF250925-1|AAF74721.1|  542|Caenorhabditis elegans PNGase protein.
          Length = 542

 Score =  181 bits (440), Expect = 1e-45
 Identities = 91/225 (40%), Positives = 125/225 (55%), Gaps = 8/225 (3%)

Query: 107 DTALLMELLDWFKHDFFKWVDKPDCDLCGER-TVNHENAIMTIE----GETCRVELYQCT 161
           + A+L +LL WFK  FF W D+P C  C  + + +      T E    G   RVE+Y C 
Sbjct: 103 EKAILKDLLHWFKTQFFTWFDRPTCPKCTLKCSTDGLQGTPTREEQKEGGASRVEVYICD 162

Query: 162 VCEGGTAM-FPRYXXXXXXXXXXSGRCGEWANCFTLLCRALGYDTRYVYDVTDHVWCEVF 220
            C   T M FPRY          +GRCGEWANCF LL  AL  ++R++YD TDHVW EV+
Sbjct: 163 GCN--TEMRFPRYNNPAKLLQTRTGRCGEWANCFGLLLAALNLESRFIYDTTDHVWNEVY 220

Query: 221 DYDSNQWLHVDPCEAKLNTPLMYSHGWGKRLSYVIAFSRDDLQDVTWRYTTNHKEVLKYR 280
                +W HVDPCE  ++ PL+Y+ GWGK L Y I +  D + DVTWRY  + K+++  R
Sbjct: 221 LLAEQRWCHVDPCENTMDRPLLYTRGWGKTLGYCIGYGSDHVVDVTWRYIWDSKKLVTQR 280

Query: 281 YLCTETELISTIMTLRKHKQRDVTEARRRYLAKRTLEELVQMMVE 325
               +    + +  L   +    TE R+R LA R + EL++MM +
Sbjct: 281 NEVRQPVFENFLSKLNSRQAEGQTEPRKRELAVRRVCELMEMMAQ 325



 Score = 48.4 bits (110), Expect = 1e-05
 Identities = 37/124 (29%), Positives = 57/124 (45%), Gaps = 5/124 (4%)

Query: 336 PLPGWHAAVLHAANVFRKVEPDWLQSYIAREEGEDFGSISWAFAASEELTCASLSIKVRT 395
           P  G+ A      NV R  E DW  +Y+ R+ G+  G+ISW F   + L  +   I++R 
Sbjct: 398 PEIGFSAQAFELENVQRVEETDWNMTYLCRKRGDAPGNISWHFDL-KSLKKSIEKIEIRM 456

Query: 396 A---LYESGRIDWTVKFDDE-NPTTVTLSDKPTKFARKFRKVIIKAELSGGDGPVRWQHA 451
           A    +E G+        D      +  S    +  +    + I A LSGG+G + +Q A
Sbjct: 457 AGIQKFEKGKAMAIACLGDSCMRLPIDCSALTIEDPKNAEILKITATLSGGEGAIGFQQA 516

Query: 452 QLFR 455
           Q+FR
Sbjct: 517 QIFR 520


>AC006603-6|ABB51200.1|  534|Caenorhabditis elegans Hypothetical
           protein B0524.1 protein.
          Length = 534

 Score = 33.1 bits (72), Expect = 0.44
 Identities = 36/129 (27%), Positives = 61/129 (47%), Gaps = 13/129 (10%)

Query: 20  RPIPVNSTDVR-EQPKASPVHSLQTKNRFLLKIQD--LFNGMQVYED-EDLLAHARDQIP 75
           RP   N   +   +PK S    L+ K R  ++  D  L    +   D ++L++  R Q  
Sbjct: 209 RPKTKNQRKIEFRRPKTSKNRKLRLKIRPRVRFIDRKLIRRRECLVDPQNLISWIRRQEK 268

Query: 76  LVTLQLMA--LDRVREQQKKIKMGEIKA-----NDLPFDTALLMELLDWFKHDFFKW--V 126
              L++      R++EQQ+  +  +I+A     +D+  D +L ME+LD  KH    W  V
Sbjct: 269 AENLRIFQEKQKRLQEQQEDAEWEQIEAQRANSDDVIEDKSLKMEVLDIVKHKNRNWIVV 328

Query: 127 DKPDCDLCG 135
           +K  C++ G
Sbjct: 329 EKKGCEIQG 337


>AL117203-3|CAB55101.1|  448|Caenorhabditis elegans Hypothetical
           protein Y48C3A.4 protein.
          Length = 448

 Score = 32.3 bits (70), Expect = 0.76
 Identities = 12/33 (36%), Positives = 17/33 (51%)

Query: 131 CDLCGERTVNHENAIMTIEGETCRVELYQCTVC 163
           C +C ++  NHENA+     E      YQC +C
Sbjct: 262 CGICRKKVENHENAMAVHVAEHADAGCYQCRLC 294


>AC024211-5|AAF36063.2| 1119|Caenorhabditis elegans Hypothetical
           protein Y76B12C.2 protein.
          Length = 1119

 Score = 30.7 bits (66), Expect = 2.3
 Identities = 15/55 (27%), Positives = 26/55 (47%), Gaps = 1/55 (1%)

Query: 216 WCEVFDYDSNQWLHVDPCEAKLNTPLMYSHGWGKRLSYVIAF-SRDDLQDVTWRY 269
           W E +     +W+ VDP    ++ PL         +SYV A  ++  + +V+ RY
Sbjct: 726 WVEYWQPREKRWICVDPLHKSVDEPLSIHEHSASPISYVFAIDNKQGICEVSQRY 780


>AC024758-3|AAF59456.3| 1037|Caenorhabditis elegans Hypothetical
           protein Y37E11AM.1 protein.
          Length = 1037

 Score = 29.5 bits (63), Expect = 5.4
 Identities = 12/36 (33%), Positives = 21/36 (58%)

Query: 289 ISTIMTLRKHKQRDVTEARRRYLAKRTLEELVQMMV 324
           + T+  L  HKQRDV   R+ +   R   E+V++++
Sbjct: 705 VKTVEFLLSHKQRDVENIRKTHKISRKTAEVVRVII 740


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.323    0.136    0.429 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,817,087
Number of Sequences: 27539
Number of extensions: 500671
Number of successful extensions: 1062
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 1042
Number of HSP's gapped (non-prelim): 13
length of query: 472
length of database: 12,573,161
effective HSP length: 84
effective length of query: 388
effective length of database: 10,259,885
effective search space: 3980835380
effective search space used: 3980835380
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 61 (28.7 bits)