GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001981-TA|BGIBMGA001981-PA|undefined
         (805 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0805 - 7378364-7378435,7378534-7378616,7378843-7379020,737...    32   2.1  
11_04_0228 + 15105752-15105921,15106774-15106919,15107369-151074...    31   3.6  
12_01_0519 - 4102251-4102352,4102522-4103439,4104763-4104837           30   6.4  
05_03_0414 + 13650483-13651388,13651559-13651657                       30   6.4  

>12_01_0805 -
           7378364-7378435,7378534-7378616,7378843-7379020,
           7379822-7379977,7380205-7380308,7381653-7381695,
           7382142-7382234,7382391-7382686,7382795-7382942,
           7383577-7383615
          Length = 403

 Score = 31.9 bits (69), Expect = 2.1
 Identities = 15/41 (36%), Positives = 20/41 (48%)

Query: 474 PAHTFARYLFLTLLPADPDLAYRVLRMTLASVNWRRREMVR 514
           PA      LFLT LP  P    +VLR T  +  W  +E ++
Sbjct: 79  PAKDLQHILFLTYLPRGPGNQQKVLRETFNNHKWELKEKIK 119


>11_04_0228 +
           15105752-15105921,15106774-15106919,15107369-15107448,
           15107598-15107720,15107814-15107906
          Length = 203

 Score = 31.1 bits (67), Expect = 3.6
 Identities = 17/62 (27%), Positives = 26/62 (41%), Gaps = 2/62 (3%)

Query: 333 CWTGWTLEAIWCVYECLADACLAPDDQRASPRLHTAYLDEEPNTGLPPRYQHVPVAGSKN 392
           C+  W   + W    C+A + L   D      L T Y++   +TG+   Y    V   KN
Sbjct: 22  CFVSWVASSSWTAAACVAVSSLPGFDGPLPFSLETGYVEVNESTGVQLFYYF--VRSEKN 79

Query: 393 PE 394
           P+
Sbjct: 80  PD 81


>12_01_0519 - 4102251-4102352,4102522-4103439,4104763-4104837
          Length = 364

 Score = 30.3 bits (65), Expect = 6.4
 Identities = 26/74 (35%), Positives = 33/74 (44%), Gaps = 5/74 (6%)

Query: 279 DSKA-CS-GPETCSGNCGERVKLSLVCAHMDSGACQSGGATCALSHTQRCIGR--DSRCW 334
           D KA CS  P TC  N G R K+S+ C      AC     TC  S  +R + R  D  C 
Sbjct: 212 DHKAQCSFRPVTCP-NDGCRAKVSVRCMTDHDSACLFKILTCEQSCEKRLMRRDMDRHCV 270

Query: 335 TGWTLEAIWCVYEC 348
           T   +  + C + C
Sbjct: 271 TVCPMRPMKCPFGC 284


>05_03_0414 + 13650483-13651388,13651559-13651657
          Length = 334

 Score = 30.3 bits (65), Expect = 6.4
 Identities = 25/74 (33%), Positives = 33/74 (44%), Gaps = 5/74 (6%)

Query: 279 DSKA-CS-GPETCSGNCGERVKLSLVCAHMDSGACQSGGATCALSHTQRCIGR--DSRCW 334
           D KA CS  P TC  N G R K+S+ C      AC     TC  +  +R + R  D  C 
Sbjct: 183 DHKAQCSFRPVTCP-NDGCRAKVSVRCMQDHDSACLFKILTCEQNCEKRLLRRDMDRHCV 241

Query: 335 TGWTLEAIWCVYEC 348
           T   +  + C + C
Sbjct: 242 TVCPMRPMKCPFGC 255


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.321    0.132    0.422 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,774,924
Number of Sequences: 37544
Number of extensions: 801014
Number of successful extensions: 1886
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1885
Number of HSP's gapped (non-prelim): 4
length of query: 805
length of database: 14,793,348
effective HSP length: 88
effective length of query: 717
effective length of database: 11,489,476
effective search space: 8237954292
effective search space used: 8237954292
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 64 (29.9 bits)