GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001981-TA|BGIBMGA001981-PA|undefined
         (805 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_41325| Best HMM Match : SWIM (HMM E-Value=0.015)                   281   1e-75
SB_1031| Best HMM Match : No HMM Matches (HMM E-Value=.)               37   0.074
SB_43257| Best HMM Match : Endonuclease_7 (HMM E-Value=0.27)           30   8.5  
SB_23247| Best HMM Match : Rho_N (HMM E-Value=0.0066)                  30   8.5  

>SB_41325| Best HMM Match : SWIM (HMM E-Value=0.015)
          Length = 950

 Score =  281 bits (690), Expect = 1e-75
 Identities = 148/300 (49%), Positives = 178/300 (59%), Gaps = 5/300 (1%)

Query: 486 LLPADPDLAYRVLRMTLASVNWRRREMVRWLVTCATELGLDALLSIMQNWYELFTPTEAT 545
           +L    DL  +VLRMTL S NWRRREMV+W + CA ELG  AL  IM+NW  LFTPTEAT
Sbjct: 630 MLQVAMDLGLQVLRMTLNSQNWRRREMVQWSIECAVELGTAALSIIMKNWSTLFTPTEAT 689

Query: 546 GPVAAAAMSHATALRLGLTFEQQEKLSACARTLALQCAAKDPPGCALSALSVCEXXXXXX 605
             VAA  MS  TA+RL LT  ++E L  CAR LALQCA+++P  C LSAL++CE      
Sbjct: 690 SLVAATVMSPTTAIRLKLTMVEKEALQCCARALALQCASREPQLCCLSALTLCE--KEPA 747

Query: 606 XXXXXXXXXXXXXXXXXSSQLFAVARYMEQRGQPXXXXXXXXXXXXNLHLHYNQDSHPAI 665
                             +QLFA+ARYME R               +  L YNQD+HP+I
Sbjct: 748 AFEAAYYLVLEAASSISPTQLFAIARYMEHRNFGRRSFKLAILAIKHFTLAYNQDTHPSI 807

Query: 666 ADIHWAVALAHSLGRAELQAMLPLLVKNVQCAPVLSDVLRRCCVA--AAGCSRSXXXXXX 723
            DI W  ALAHSLGR EL  ++PL++K VQC  VLSD+L RC  A  +  C  S      
Sbjct: 808 GDIQWTCALAHSLGREELGKVIPLIIKAVQCPSVLSDILFRCAFAQTSPACGGSFGKLAL 867

Query: 724 -XXXXXXXXXEAALRAYASTTHARLAHISPRHYADFVDFLGKARDTFALAHDGPHQFAAL 782
                     E+ + AY +T H+RL HISPRHY DFVDFL KA+D F LA DGPH+F AL
Sbjct: 868 CDKEPLTQLLESTISAYVNTVHSRLNHISPRHYGDFVDFLCKAQDVFELAVDGPHRFRAL 927



 Score = 52.8 bits (121), Expect = 1e-06
 Identities = 31/103 (30%), Positives = 47/103 (45%), Gaps = 6/103 (5%)

Query: 334 WTGWTLEAIWCVYECLADACLAPDDQRASPRLHTAYLDEEPNTGLPPRYQHVPVAGSKNP 393
           W G  L+ I  +Y+ L +A  + +DQ     L +    ++        Y H+   G  N 
Sbjct: 406 WIGHALDPIVVLYDTLLEA--STEDQSDIEELDSYKCTQQDVKS----YTHICAPGRLND 459

Query: 394 EETYXXXXXXXXXXXXXMQRMLPSGLYAQERYCKQEERLISQL 436
            E+Y              QR +P G YAQ++ C+QEE LI+QL
Sbjct: 460 TESYLTLAVETALMGLGQQRSMPDGFYAQDKACRQEEHLIAQL 502


>SB_1031| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1933

 Score = 36.7 bits (81), Expect = 0.074
 Identities = 30/122 (24%), Positives = 43/122 (35%)

Query: 661  SHPAIADIHWAVALAHSLGRAELQAMLPLLVKNVQCAPVLSDVLRRCCVAAAGCSRSXXX 720
            S P   +I W   L+  LG + LQ      +  V    VL ++        A  + +   
Sbjct: 1707 SPPCSEEIKWLCTLSARLGTSYLQRFCVSCLDAVVSPFVLHELALDAARHLARSNPAQLA 1766

Query: 721  XXXXXXXXXXXXEAALRAYASTTHARLAHISPRHYADFVDFLGKARDTFALAHDGPHQFA 780
                        + +L  YA      L HI+   Y DFV+ L  AR  F +      QF 
Sbjct: 1767 INLRSPNISPLVQKSLTMYAQCIRYNLIHINQSDYDDFVELLRHARGAFCMVPGAMTQFN 1826

Query: 781  AL 782
             L
Sbjct: 1827 EL 1828



 Score = 30.7 bits (66), Expect = 4.8
 Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 3/59 (5%)

Query: 504  SVNWRRREM---VRWLVTCATELGLDALLSIMQNWYELFTPTEATGPVAAAAMSHATAL 559
            S NW  R     V W+   A E+G  A+  +++ W    TP+E       A+ S+ TA+
Sbjct: 1386 SPNWLSRTYSSHVSWISHQAMEIGSVAIQLLIERWETNLTPSEVASIADRASRSNDTAM 1444


>SB_43257| Best HMM Match : Endonuclease_7 (HMM E-Value=0.27)
          Length = 398

 Score = 29.9 bits (64), Expect = 8.5
 Identities = 15/26 (57%), Positives = 15/26 (57%), Gaps = 1/26 (3%)

Query: 156 ATHLAPRTVFHKALDAVDISWENDHL 181
           AT L  R  FH  LD  DIS E DHL
Sbjct: 176 ATQLPQREAFHSKLDGTDIS-EEDHL 200


>SB_23247| Best HMM Match : Rho_N (HMM E-Value=0.0066)
          Length = 835

 Score = 29.9 bits (64), Expect = 8.5
 Identities = 15/26 (57%), Positives = 15/26 (57%), Gaps = 1/26 (3%)

Query: 156 ATHLAPRTVFHKALDAVDISWENDHL 181
           AT L  R  FH  LD  DIS E DHL
Sbjct: 753 ATQLPQREAFHSKLDGTDIS-EEDHL 777


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.321    0.132    0.422 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,849,227
Number of Sequences: 59808
Number of extensions: 828557
Number of successful extensions: 1741
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 1729
Number of HSP's gapped (non-prelim): 12
length of query: 805
length of database: 16,821,457
effective HSP length: 88
effective length of query: 717
effective length of database: 11,558,353
effective search space: 8287339101
effective search space used: 8287339101
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 64 (29.9 bits)