GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001981-TA|BGIBMGA001981-PA|undefined
         (805 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U10438-1|AAA19083.3|  524|Caenorhabditis elegans Hypothetical pr...    34   0.35 
DQ340624-1|ABC65812.1|  524|Caenorhabditis elegans chondroitin p...    34   0.35 
U42846-1|AAA83600.2|  872|Caenorhabditis elegans Hypothetical pr...    34   0.46 
U29378-10|AAP40540.1|  125|Caenorhabditis elegans Adamts family ...    30   5.6  
U29378-8|AAA68721.4| 1020|Caenorhabditis elegans Adamts family p...    30   5.6  
AB072347-1|BAC41253.1| 1020|Caenorhabditis elegans ADAMTS-like p...    30   5.6  

>U10438-1|AAA19083.3|  524|Caenorhabditis elegans Hypothetical
           protein B0280.5 protein.
          Length = 524

 Score = 34.3 bits (75), Expect = 0.35
 Identities = 24/89 (26%), Positives = 39/89 (43%), Gaps = 5/89 (5%)

Query: 270 GAGEASSSGDSKAC---SGPETCSGNCGERVKLSLVCAHMDSGACQSGGATCALSHTQRC 326
           G+GEAS  G  +A    SG  +  G+      +  VC +++ GA  SGG T         
Sbjct: 102 GSGEASGEGSGEASGEGSGEASGEGSGSGEETVENVCENLEDGAYSSGGCTTYYFFCTTN 161

Query: 327 IGRDSRCWTG--WTLEAIWCVYECLADAC 353
             R   C T   +  ++  C+++ L + C
Sbjct: 162 TARFLSCPTPLFYDADSQKCIWKSLVEEC 190


>DQ340624-1|ABC65812.1|  524|Caenorhabditis elegans chondroitin
           proteoglycan-2 protein.
          Length = 524

 Score = 34.3 bits (75), Expect = 0.35
 Identities = 24/89 (26%), Positives = 39/89 (43%), Gaps = 5/89 (5%)

Query: 270 GAGEASSSGDSKAC---SGPETCSGNCGERVKLSLVCAHMDSGACQSGGATCALSHTQRC 326
           G+GEAS  G  +A    SG  +  G+      +  VC +++ GA  SGG T         
Sbjct: 102 GSGEASGEGSGEASGEGSGEASGEGSGSGEETVENVCENLEDGAYSSGGCTTYYFFCTTN 161

Query: 327 IGRDSRCWTG--WTLEAIWCVYECLADAC 353
             R   C T   +  ++  C+++ L + C
Sbjct: 162 TARFLSCPTPLFYDADSQKCIWKSLVEEC 190


>U42846-1|AAA83600.2|  872|Caenorhabditis elegans Hypothetical
           protein T19D2.1 protein.
          Length = 872

 Score = 33.9 bits (74), Expect = 0.46
 Identities = 19/56 (33%), Positives = 26/56 (46%), Gaps = 6/56 (10%)

Query: 289 CSGNCGERVKL------SLVCAHMDSGACQSGGATCALSHTQRCIGRDSRCWTGWT 338
           CS NCGE V+       +  C   DS      G  C+ + T+R +   S  WTGW+
Sbjct: 777 CSVNCGEGVQFRKRACFAAFCRGKDSDVRNCYGQRCSETTTRRPLVNRSGLWTGWS 832


>U29378-10|AAP40540.1|  125|Caenorhabditis elegans Adamts family
           protein 2, isoform b protein.
          Length = 125

 Score = 30.3 bits (65), Expect = 5.6
 Identities = 21/77 (27%), Positives = 37/77 (48%), Gaps = 5/77 (6%)

Query: 262 AQQRWQSVGAGEASSSGDSKACSGPETCSGNCGERVK-LSLVCAHMDSGACQSGGATCAL 320
           ++Q++ +  A  +SS+ D    SG   CS +CG  VK  +  C    +G C       A+
Sbjct: 5   SEQQFCNEQACASSSANDWGTWSGWSQCSVSCGAGVKRRTRTCR---TGNCPGNYKESAI 61

Query: 321 SHTQRCIGRDSRCWTGW 337
            + + C  +++  W GW
Sbjct: 62  CNDRDCENKNA-AWGGW 77


>U29378-8|AAA68721.4| 1020|Caenorhabditis elegans Adamts family
           protein 2, isoform a protein.
          Length = 1020

 Score = 30.3 bits (65), Expect = 5.6
 Identities = 21/77 (27%), Positives = 37/77 (48%), Gaps = 5/77 (6%)

Query: 262 AQQRWQSVGAGEASSSGDSKACSGPETCSGNCGERVK-LSLVCAHMDSGACQSGGATCAL 320
           ++Q++ +  A  +SS+ D    SG   CS +CG  VK  +  C    +G C       A+
Sbjct: 900 SEQQFCNEQACASSSANDWGTWSGWSQCSVSCGAGVKRRTRTCR---TGNCPGNYKESAI 956

Query: 321 SHTQRCIGRDSRCWTGW 337
            + + C  +++  W GW
Sbjct: 957 CNDRDCENKNA-AWGGW 972


>AB072347-1|BAC41253.1| 1020|Caenorhabditis elegans ADAMTS-like
           protease protein.
          Length = 1020

 Score = 30.3 bits (65), Expect = 5.6
 Identities = 21/77 (27%), Positives = 37/77 (48%), Gaps = 5/77 (6%)

Query: 262 AQQRWQSVGAGEASSSGDSKACSGPETCSGNCGERVK-LSLVCAHMDSGACQSGGATCAL 320
           ++Q++ +  A  +SS+ D    SG   CS +CG  VK  +  C    +G C       A+
Sbjct: 900 SEQQFCNEQACASSSANDWGTWSGWSQCSVSCGAGVKRRTRTCR---TGNCPGNYKESAI 956

Query: 321 SHTQRCIGRDSRCWTGW 337
            + + C  +++  W GW
Sbjct: 957 CNDRDCENKNA-AWGGW 972


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.321    0.132    0.422 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,342,545
Number of Sequences: 27539
Number of extensions: 599884
Number of successful extensions: 1197
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 1194
Number of HSP's gapped (non-prelim): 7
length of query: 805
length of database: 12,573,161
effective HSP length: 87
effective length of query: 718
effective length of database: 10,177,268
effective search space: 7307278424
effective search space used: 7307278424
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 63 (29.5 bits)