GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001981-TA|BGIBMGA001981-PA|undefined
         (805 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g27490.1 68416.m03437 DC1 domain-containing protein contains ...    30   5.3  
At3g07440.1 68416.m00887 expressed protein                             30   7.0  

>At3g27490.1 68416.m03437 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 682

 Score = 30.3 bits (65), Expect = 5.3
 Identities = 15/26 (57%), Positives = 16/26 (61%)

Query: 574 CARTLALQCAAKDPPGCALSALSVCE 599
           C   L L+CAAK PP  ALS L V E
Sbjct: 221 CKFNLDLRCAAKSPPPIALSNLKVHE 246


>At3g07440.1 68416.m00887 expressed protein
          Length = 235

 Score = 29.9 bits (64), Expect = 7.0
 Identities = 13/47 (27%), Positives = 26/47 (55%)

Query: 16  MTEQFLSDPRLLLWRNQNTPMTEKCRQLWEQLGALWVSIVLDPGSNK 62
           + +QF+   RL+L  +++ P  +K  +L+ +L   W  +  D G +K
Sbjct: 88  LRDQFMRRTRLVLKESEHEPWCKKYMELYNELRENWERLYWDEGYSK 134


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.321    0.132    0.422 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,668,281
Number of Sequences: 28952
Number of extensions: 572785
Number of successful extensions: 1244
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1242
Number of HSP's gapped (non-prelim): 2
length of query: 805
length of database: 12,070,560
effective HSP length: 87
effective length of query: 718
effective length of database: 9,551,736
effective search space: 6858146448
effective search space used: 6858146448
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 63 (29.5 bits)