Silkworm BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001980-TA|BGIBMGA001980-PA|undefined
         (128 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g42920.1 68415.m05318 pentatricopeptide (PPR) repeat-containi...    26   6.9  

>At2g42920.1 68415.m05318 pentatricopeptide (PPR) repeat-containing
           protein  and genefinder
          Length = 559

 Score = 26.2 bits (55), Expect = 6.9
 Identities = 11/28 (39%), Positives = 16/28 (57%)

Query: 86  EAGCVENVLQVGECPPATRLRLFTNMRL 113
           + GC+E  L V EC P  +L  + +M L
Sbjct: 305 KCGCIEEGLNVFECAPKKQLSCWNSMIL 332


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.328    0.140    0.445 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,404,860
Number of Sequences: 28952
Number of extensions: 77526
Number of successful extensions: 152
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 151
Number of HSP's gapped (non-prelim): 1
length of query: 128
length of database: 12,070,560
effective HSP length: 73
effective length of query: 55
effective length of database: 9,957,064
effective search space: 547638520
effective search space used: 547638520
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.8 bits)
S2: 54 (25.8 bits)