GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001980-TA|BGIBMGA001980-PA|undefined
         (128 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22H10.03c |kap114||karyopherin Kap14|Schizosaccharomyces pom...    27   0.70 
SPAC167.07c ||SPAC57A7.03c|ubiquitin-protein ligase E3 |Schizosa...    24   8.6  
SPAC9G1.03c |rpl3001|rpl30-1, rpl30|60S ribosomal protein L30|Sc...    24   8.6  

>SPAC22H10.03c |kap114||karyopherin Kap14|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 986

 Score = 27.5 bits (58), Expect = 0.70
 Identities = 14/48 (29%), Positives = 28/48 (58%), Gaps = 2/48 (4%)

Query: 61  MYSSLARAPPDDHRNIAFCRGLKLLEAGCVENVLQVGECPPATRLRLF 108
           +Y  +  APP+D   +   RG+KL  + C+E ++++ +   A  +R+F
Sbjct: 176 LYQFIFSAPPNDSMRMLQARGIKLFRS-CLE-LIEIYKETKAEHVRVF 221


>SPAC167.07c ||SPAC57A7.03c|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1029

 Score = 23.8 bits (49), Expect = 8.6
 Identities = 12/37 (32%), Positives = 20/37 (54%), Gaps = 1/37 (2%)

Query: 62  YSSLARA-PPDDHRNIAFCRGLKLLEAGCVENVLQVG 97
           +SS+    PPD   +  F   L+L E  C+ ++L +G
Sbjct: 269 FSSIENCIPPDLIIDKVFSSSLQLSEEACISSLLNLG 305


>SPAC9G1.03c |rpl3001|rpl30-1, rpl30|60S ribosomal protein
           L30|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 109

 Score = 23.8 bits (49), Expect = 8.6
 Identities = 10/26 (38%), Positives = 14/26 (53%)

Query: 82  LKLLEAGCVENVLQVGECPPATRLRL 107
           LK L +G  + +L  G CPP  +  L
Sbjct: 37  LKTLRSGKAKLILIAGNCPPLRKSEL 62


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.328    0.140    0.445 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 447,513
Number of Sequences: 5004
Number of extensions: 14072
Number of successful extensions: 37
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 35
Number of HSP's gapped (non-prelim): 3
length of query: 128
length of database: 2,362,478
effective HSP length: 65
effective length of query: 63
effective length of database: 2,037,218
effective search space: 128344734
effective search space used: 128344734
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.8 bits)
S2: 49 (23.8 bits)