GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001980-TA|BGIBMGA001980-PA|undefined
         (128 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1115 - 34623892-34624129,34624589-34624737,34625017-346251...    31   0.22 
03_01_0004 + 41829-42203,42376-42474,42699-42743,43604-43741,438...    29   1.5  
02_02_0365 + 9488328-9488583,9489343-9489495,9491159-9491451,949...    28   2.0  
12_02_1279 + 27510605-27513301                                         26   8.2  
12_02_0953 - 24736642-24736673,24737104-24737188,24737267-247373...    26   8.2  

>01_06_1115 -
           34623892-34624129,34624589-34624737,34625017-34625125,
           34625339-34625408,34625600-34626111,34626420-34626524,
           34626617-34626696
          Length = 420

 Score = 31.5 bits (68), Expect = 0.22
 Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 1/55 (1%)

Query: 69  PPDDHRNIAFCRGLKLLEAGCVENVLQVGECPPATRLRLFTNMRLAHPRRINKNL 123
           PPDDH +I +  G + +      NVL + +  PA R  +  N  L  P   N N+
Sbjct: 51  PPDDHSDI-YVLGFQEIVPLNAGNVLVIEDNEPAARWLVLINQALNRPAETNANV 104


>03_01_0004 +
          41829-42203,42376-42474,42699-42743,43604-43741,
          43852-44157,44779-45689,45826-46093
          Length = 713

 Score = 28.7 bits (61), Expect = 1.5
 Identities = 18/40 (45%), Positives = 21/40 (52%), Gaps = 4/40 (10%)

Query: 47 VVYWSFPRDERDICMYSSLARAPPDDHRNIAFCRGLKLLE 86
          + Y SFP   R     SS+A AP DD      CRGL+ LE
Sbjct: 37 LAYSSFPSASRATTASSSMAVAPTDD----GCCRGLEGLE 72


>02_02_0365 +
           9488328-9488583,9489343-9489495,9491159-9491451,
           9491538-9492105,9492503-9493011
          Length = 592

 Score = 28.3 bits (60), Expect = 2.0
 Identities = 11/31 (35%), Positives = 20/31 (64%)

Query: 91  ENVLQVGECPPATRLRLFTNMRLAHPRRINK 121
           +NV ++ +C P+ + RL    R+  P+RI+K
Sbjct: 74  KNVPELMQCTPSEKSRLLKQKRIYDPKRIDK 104


>12_02_1279 + 27510605-27513301
          Length = 898

 Score = 26.2 bits (55), Expect = 8.2
 Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 5/52 (9%)

Query: 47  VVYWSFPRDERDICMYSSLARAPPDDHRNIAFC----RGLKLLEAGCVENVL 94
           +VY    R   D C++ + A AP +    +  C    RGL  L AGC   +L
Sbjct: 627 LVYEYMNRGSLDQCLFRAAA-APLEWPERMGVCVGAARGLAYLHAGCTRKIL 677


>12_02_0953 -
           24736642-24736673,24737104-24737188,24737267-24737386,
           24737484-24737549,24737629-24737799,24737901-24737999,
           24738075-24738186,24738282-24738343,24738412-24738483,
           24738583-24738681,24738764-24738997,24739104-24739178,
           24739299-24739386,24739478-24739638,24739734-24739841,
           24739934-24741922,24742007-24742279,24742957-24743295,
           24743449-24745038,24745166-24745241,24745333-24745412,
           24745614-24745679,24745761-24745830,24745899-24746134,
           24746149-24746319,24746915-24747097,24747176-24747241,
           24747326-24747389,24747472-24747530,24747612-24747699,
           24747799-24747891,24747956-24748116,24748215-24748307,
           24748405-24748518,24748654-24748773,24748852-24748935,
           24749016-24749171,24749518-24750154,24752874-24752929
          Length = 2815

 Score = 26.2 bits (55), Expect = 8.2
 Identities = 14/41 (34%), Positives = 21/41 (51%)

Query: 71  DDHRNIAFCRGLKLLEAGCVENVLQVGECPPATRLRLFTNM 111
           +D RN  +   L  LE GCV +++++     A R    TNM
Sbjct: 392 EDIRNGVYVENLTELEVGCVSDIIKLLMQGSANRKVAATNM 432


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.328    0.140    0.445 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,110,829
Number of Sequences: 37544
Number of extensions: 102731
Number of successful extensions: 218
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 216
Number of HSP's gapped (non-prelim): 5
length of query: 128
length of database: 14,793,348
effective HSP length: 74
effective length of query: 54
effective length of database: 12,015,092
effective search space: 648814968
effective search space used: 648814968
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.8 bits)
S2: 55 (26.2 bits)