GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001980-TA|BGIBMGA001980-PA|undefined
         (128 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_41325| Best HMM Match : SWIM (HMM E-Value=0.015)                    79   9e-16
SB_1031| Best HMM Match : No HMM Matches (HMM E-Value=.)               54   3e-08
SB_27182| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.2  
SB_34968| Best HMM Match : Plasmid_killer (HMM E-Value=4.3)            26   8.4  

>SB_41325| Best HMM Match : SWIM (HMM E-Value=0.015)
          Length = 950

 Score = 79.4 bits (187), Expect = 9e-16
 Identities = 42/84 (50%), Positives = 54/84 (64%), Gaps = 1/84 (1%)

Query: 14  TLLDITAKIVAANIPFQXXXXXXXXXXXXVQRRVVYWSFPRDERDICMYSSL-ARAPPDD 72
           TLLD+ AK VA+NIPF+            VQ RVV+WSFPR+E+DICMYSSL       +
Sbjct: 34  TLLDLAAKCVASNIPFERVEEQIQRVPEPVQLRVVHWSFPRNEKDICMYSSLHTSVCHAE 93

Query: 73  HRNIAFCRGLKLLEAGCVENVLQV 96
            + + F +GL LLE   V++VLQV
Sbjct: 94  LKRLPFQKGLHLLEENAVKDVLQV 117


>SB_1031| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1933

 Score = 54.4 bits (125), Expect = 3e-08
 Identities = 30/83 (36%), Positives = 44/83 (53%), Gaps = 5/83 (6%)

Query: 15  LLDITAKIVAANIPFQXXXXXXXXXXXXVQRRVVYWSFPRDERDICMYSSLARAPPDDHR 74
           LL++ A+ VA NIPF+            +Q R+ +WSFP  E DI +YS LA    ++  
Sbjct: 133 LLELCARTVARNIPFETVERTYSHIPEQLQLRIAFWSFPLAEDDIRLYSCLANGSSEE-- 190

Query: 75  NIAFCRGLKLLEAGCVENVLQVG 97
              F R   L+ A  V++ LQ+G
Sbjct: 191 ---FQRAEHLVRAKAVKDALQIG 210


>SB_27182| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 149

 Score = 29.1 bits (62), Expect = 1.2
 Identities = 18/83 (21%), Positives = 37/83 (44%), Gaps = 3/83 (3%)

Query: 14  TLLDITAKIVAANIPFQXXXXXXXXXXXXVQRRVVYWSFPRDERDICMYSSLARAPPDDH 73
           TL+D   KI++AN P              +Q +V+  SFP ++  +   ++  R    + 
Sbjct: 69  TLVDSCCKILSANFPISYVQDQWETVPDELQLKVISSSFPVEKEKVMQIANFGRG---EQ 125

Query: 74  RNIAFCRGLKLLEAGCVENVLQV 96
            N  +   L++ +   + N+ Q+
Sbjct: 126 MNGRYSDPLEVFKPKNIRNMKQI 148


>SB_34968| Best HMM Match : Plasmid_killer (HMM E-Value=4.3)
          Length = 387

 Score = 26.2 bits (55), Expect = 8.4
 Identities = 12/42 (28%), Positives = 22/42 (52%)

Query: 43  VQRRVVYWSFPRDERDICMYSSLARAPPDDHRNIAFCRGLKL 84
           ++R ++ WS P  + +   Y+S  RA   +++N      LKL
Sbjct: 207 LKRLLIIWSSPLSDSNRPSYTSRGRAVETEYKNTKIKTALKL 248


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.328    0.140    0.445 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,485,731
Number of Sequences: 59808
Number of extensions: 109565
Number of successful extensions: 217
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 212
Number of HSP's gapped (non-prelim): 4
length of query: 128
length of database: 16,821,457
effective HSP length: 74
effective length of query: 54
effective length of database: 12,395,665
effective search space: 669365910
effective search space used: 669365910
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.8 bits)
S2: 55 (26.2 bits)