GeneModel BLAST Result against fruitfly

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001980-TA|BGIBMGA001980-PA|undefined
         (128 letters)

Database: fruitfly 
           52,641 sequences; 24,830,863 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE014298-2787|AAF48900.2| 2030|Drosophila melanogaster CG32542-P...    54   8e-08
AY071459-1|AAL49081.1|  288|Drosophila melanogaster RE54049p pro...    27   5.8  
AY061022-1|AAL28570.1|  182|Drosophila melanogaster HL04722p pro...    27   5.8  
AE013599-3958|AAF47274.1|  288|Drosophila melanogaster CG2928-PA...    27   5.8  

>AE014298-2787|AAF48900.2| 2030|Drosophila melanogaster CG32542-PA
           protein.
          Length = 2030

 Score = 53.6 bits (123), Expect = 8e-08
 Identities = 30/84 (35%), Positives = 45/84 (53%), Gaps = 5/84 (5%)

Query: 14  TLLDITAKIVAANIPFQXXXXXXXXXXXXVQRRVVYWSFPRDERDICMYSSLARAPPDDH 73
           TL ++ A+ VA+ IPF+            +Q R+ +WSFP +E DI +YS LA +  D+ 
Sbjct: 24  TLAELAARCVASYIPFELVEHVYPPVPEQLQLRIAFWSFPDNEEDIRLYSCLANSSADE- 82

Query: 74  RNIAFCRGLKLLEAGCVENVLQVG 97
               F RG  L     V++ LQ+G
Sbjct: 83  ----FNRGDSLFRLRAVKDPLQIG 102


>AY071459-1|AAL49081.1|  288|Drosophila melanogaster RE54049p
           protein.
          Length = 288

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 22/57 (38%), Positives = 28/57 (49%), Gaps = 4/57 (7%)

Query: 53  PRDERDICMYSSLARAPPDDHRNIAFCRGLKLLE-AGCVENVLQVGECPPATRLRLF 108
           PRDE     +  LA A P+ HR IA    LK    A  +++ LQ    P  T+ RLF
Sbjct: 230 PRDEDLPYFHLGLAAAQPNRHRKIATISSLKQQHFASILQSDLQP---PHQTQRRLF 283


>AY061022-1|AAL28570.1|  182|Drosophila melanogaster HL04722p
           protein.
          Length = 182

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 22/57 (38%), Positives = 28/57 (49%), Gaps = 4/57 (7%)

Query: 53  PRDERDICMYSSLARAPPDDHRNIAFCRGLKLLE-AGCVENVLQVGECPPATRLRLF 108
           PRDE     +  LA A P+ HR IA    LK    A  +++ LQ    P  T+ RLF
Sbjct: 124 PRDEDLPYFHLGLAAAQPNRHRKIATISSLKQQHFASILQSDLQP---PHQTQRRLF 177


>AE013599-3958|AAF47274.1|  288|Drosophila melanogaster CG2928-PA
           protein.
          Length = 288

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 22/57 (38%), Positives = 28/57 (49%), Gaps = 4/57 (7%)

Query: 53  PRDERDICMYSSLARAPPDDHRNIAFCRGLKLLE-AGCVENVLQVGECPPATRLRLF 108
           PRDE     +  LA A P+ HR IA    LK    A  +++ LQ    P  T+ RLF
Sbjct: 230 PRDEDLPYFHLGLAAAQPNRHRKIATISSLKQQHFASILQSDLQP---PHQTQRRLF 283


  Database: fruitfly
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 24,830,863
  Number of sequences in database:  52,641
  
Lambda     K      H
   0.328    0.140    0.445 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,004,893
Number of Sequences: 52641
Number of extensions: 162398
Number of successful extensions: 265
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 264
Number of HSP's gapped (non-prelim): 4
length of query: 128
length of database: 24,830,863
effective HSP length: 77
effective length of query: 51
effective length of database: 20,777,506
effective search space: 1059652806
effective search space used: 1059652806
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.8 bits)
S2: 57 (27.1 bits)