GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001980-TA|BGIBMGA001980-PA|undefined
         (128 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL117203-3|CAB55101.1|  448|Caenorhabditis elegans Hypothetical ...    30   0.44 
Z49912-5|CAA90136.1|  312|Caenorhabditis elegans Hypothetical pr...    28   1.8  

>AL117203-3|CAB55101.1|  448|Caenorhabditis elegans Hypothetical
           protein Y48C3A.4 protein.
          Length = 448

 Score = 30.3 bits (65), Expect = 0.44
 Identities = 17/71 (23%), Positives = 34/71 (47%), Gaps = 2/71 (2%)

Query: 57  RDICMYSSLARAPPDDHRNIAFCRGLKLLEAGCVENVLQVGECPPATRLRLFTNMRLAHP 116
           RD  +   + R   ++H N       +  +AGC +  L   +     + +++T+MR  HP
Sbjct: 256 RDKALQCGICRKKVENHENAMAVHVAEHADAGCYQCRLCGWQA--IDKYKIYTHMREEHP 313

Query: 117 RRINKNLDVCD 127
           R+++  +D  D
Sbjct: 314 RKVDMFVDKRD 324


>Z49912-5|CAA90136.1|  312|Caenorhabditis elegans Hypothetical
           protein T24F1.1 protein.
          Length = 312

 Score = 28.3 bits (60), Expect = 1.8
 Identities = 13/33 (39%), Positives = 17/33 (51%)

Query: 51  SFPRDERDICMYSSLARAPPDDHRNIAFCRGLK 83
           +F R E D+  YS LA  P  + R  A C+  K
Sbjct: 137 TFKRREADVLRYSELAATPLQNERTNAVCQCFK 169


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.328    0.140    0.445 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,541,392
Number of Sequences: 27539
Number of extensions: 82770
Number of successful extensions: 139
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 138
Number of HSP's gapped (non-prelim): 2
length of query: 128
length of database: 12,573,161
effective HSP length: 74
effective length of query: 54
effective length of database: 10,535,275
effective search space: 568904850
effective search space used: 568904850
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.8 bits)
S2: 54 (25.8 bits)