Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001979-TA|BGIBMGA001979-PA|IPR003112|Olfactomedin-like,
IPR007110|Immunoglobulin-like, IPR008161|Collagen helix repeat,
IPR008160|Collagen triple helix repeat, IPR013098|Immunoglobulin I-set
(665 letters)
Database: tribolium
317 sequences; 114,650 total letters
Searching....................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad... 29 0.078
EF127808-1|ABL67945.1| 311|Tribolium castaneum nicotinic acetyl... 25 1.3
EF127807-1|ABL67944.1| 311|Tribolium castaneum nicotinic acetyl... 25 1.3
EF127810-1|ABL67947.1| 311|Tribolium castaneum nicotinic acetyl... 23 6.7
EF127809-1|ABL67946.1| 311|Tribolium castaneum nicotinic acetyl... 23 6.7
EF127806-1|ABL67943.1| 311|Tribolium castaneum nicotinic acetyl... 23 6.7
>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
adhesion molecule splicevariant 3.12.3.1 protein.
Length = 1639
Score = 29.5 bits (63), Expect = 0.078
Identities = 22/103 (21%), Positives = 42/103 (40%), Gaps = 3/103 (2%)
Query: 292 LIQIQAWPEPVLAWECDGVTIEGSRYKSEVIPTGDTWRWIMTLEILGVRDNDMRQYSCVA 351
L Q +P P W +EG+ K V + TL I + D +Y CV
Sbjct: 253 LCPAQGFPSPSFRWY---KFVEGTTRKQAVTLNDRVKQVAGTLIIREAKVEDSGKYLCVV 309
Query: 352 KNELKNQTIKGDIRLMYPGPNQPTQVMQPIEYGSRAPILTSYD 394
N + ++++ + + P + +Q I++G A +++
Sbjct: 310 NNSVGGESVETVLTVTAPLKAKIEPQVQTIDFGRPATFTCNFE 352
Score = 26.2 bits (55), Expect = 0.72
Identities = 11/40 (27%), Positives = 14/40 (35%)
Query: 248 FIPPTFAQDHTRVIVRESERLRLSCNPMGRPEPSVEWRRY 287
F PP V+ + L C G P P + W Y
Sbjct: 411 FEPPQIRHAFNEETVQPGNSVFLKCIASGNPTPEITWELY 450
Score = 25.4 bits (53), Expect = 1.3
Identities = 9/23 (39%), Positives = 13/23 (56%)
Query: 270 LSCNPMGRPEPSVEWRRYDDTAL 292
+ C+ G P P + W R D TA+
Sbjct: 43 VECSAHGNPTPDIIWVRSDGTAV 65
Score = 25.4 bits (53), Expect = 1.3
Identities = 24/76 (31%), Positives = 34/76 (44%), Gaps = 10/76 (13%)
Query: 299 PEPVLAWECDGVTIEGSRYKSEVIPTGDTWRWIMTLEILGV-RDNDMRQYSCVAKNELKN 357
P + WE DG + +R K +V G TL I V R +D Y CVAKN +
Sbjct: 538 PVDSVVWERDGRQLPINR-KQKVFING-------TLIIENVERASDQATYDCVAKNS-QG 588
Query: 358 QTIKGDIRLMYPGPNQ 373
+ +G + + P Q
Sbjct: 589 YSARGSLEVQVMVPPQ 604
Score = 25.4 bits (53), Expect = 1.3
Identities = 12/50 (24%), Positives = 20/50 (40%)
Query: 237 SIYNNTLEKELFIPPTFAQDHTRVIVRESERLRLSCNPMGRPEPSVEWRR 286
S+ T + +PP + + T + + C G P P V W+R
Sbjct: 685 SVTTYTTSLFINVPPRWILEPTDKAFAQGSDAAVECKADGFPRPVVTWKR 734
>EF127808-1|ABL67945.1| 311|Tribolium castaneum nicotinic
acetylcholine receptor subunitalpha 6 transcript variant
3 protein.
Length = 311
Score = 25.4 bits (53), Expect = 1.3
Identities = 12/51 (23%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
Query: 414 LITPMNGTTTYIKPRR-NTNCQLYAIGKPVYHRYKEELFGAWLRDSNATDV 463
++ NG+ Y+ P + C++ P ++ + FG+W D N D+
Sbjct: 108 VVVKHNGSCLYVPPGIFKSTCKMDITWFPFDDQHCDMKFGSWTYDGNQLDL 158
>EF127807-1|ABL67944.1| 311|Tribolium castaneum nicotinic
acetylcholine receptor subunitalpha 6 transcript variant
2 protein.
Length = 311
Score = 25.4 bits (53), Expect = 1.3
Identities = 12/51 (23%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
Query: 414 LITPMNGTTTYIKPRR-NTNCQLYAIGKPVYHRYKEELFGAWLRDSNATDV 463
++ NG+ Y+ P + C++ P ++ + FG+W D N D+
Sbjct: 108 VVVKHNGSCLYVPPGIFKSTCKIDITWFPFDDQHCDMKFGSWTYDGNQLDL 158
>EF127810-1|ABL67947.1| 311|Tribolium castaneum nicotinic
acetylcholine receptor subunitalpha 6 transcript variant
5 protein.
Length = 311
Score = 23.0 bits (47), Expect = 6.7
Identities = 11/51 (21%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
Query: 414 LITPMNGTTTYIKPRR-NTNCQLYAIGKPVYHRYKEELFGAWLRDSNATDV 463
++ G+ Y+ P + C++ P ++ + FG+W D N D+
Sbjct: 108 VVVKHGGSCLYVPPGIFKSTCKMDITWFPFDDQHCDMKFGSWTYDGNQLDL 158
>EF127809-1|ABL67946.1| 311|Tribolium castaneum nicotinic
acetylcholine receptor subunitalpha 6 transcript variant
4 protein.
Length = 311
Score = 23.0 bits (47), Expect = 6.7
Identities = 11/51 (21%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
Query: 414 LITPMNGTTTYIKPRR-NTNCQLYAIGKPVYHRYKEELFGAWLRDSNATDV 463
++ G+ Y+ P + C++ P ++ + FG+W D N D+
Sbjct: 108 VVVKHGGSCLYVPPGIFKSTCKMDITWFPFDDQHCDMKFGSWTYDGNQLDL 158
>EF127806-1|ABL67943.1| 311|Tribolium castaneum nicotinic
acetylcholine receptor subunitalpha 6 transcript variant
1 protein.
Length = 311
Score = 23.0 bits (47), Expect = 6.7
Identities = 11/51 (21%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
Query: 414 LITPMNGTTTYIKPRR-NTNCQLYAIGKPVYHRYKEELFGAWLRDSNATDV 463
++ G+ Y+ P + C++ P ++ + FG+W D N D+
Sbjct: 108 VVVKHGGSCLYVPPGIFKSTCKMDITWFPFDDQHCDMKFGSWTYDGNQLDL 158
Database: tribolium
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 114,650
Number of sequences in database: 317
Lambda K H
0.316 0.137 0.432
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 166,160
Number of Sequences: 317
Number of extensions: 7802
Number of successful extensions: 20
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 13
Number of HSP's gapped (non-prelim): 12
length of query: 665
length of database: 114,650
effective HSP length: 61
effective length of query: 604
effective length of database: 95,313
effective search space: 57569052
effective search space used: 57569052
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 46 (22.6 bits)
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