GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001979-TA|BGIBMGA001979-PA|IPR003112|Olfactomedin-like,
IPR007110|Immunoglobulin-like, IPR008161|Collagen helix repeat,
IPR008160|Collagen triple helix repeat, IPR013098|Immunoglobulin I-set
         (665 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC513.05 |ams1||alpha-mannosidase |Schizosaccharomyces pombe|c...    33   0.096
SPAC22E12.11c |set3||histone lysine methyltransferase Set3|Schiz...    30   1.2  
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc...    29   2.1  
SPBC83.05 |||mitochondrial RNA-binding protein |Schizosaccharomy...    29   2.7  
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    29   2.7  
SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101 |Sch...    27   6.3  
SPAC6B12.12 |tom70||mitochondrial TOM complex subunit Tom70|Schi...    27   8.4  

>SPAC513.05 |ams1||alpha-mannosidase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1077

 Score = 33.5 bits (73), Expect = 0.096
 Identities = 24/70 (34%), Positives = 32/70 (45%), Gaps = 7/70 (10%)

Query: 453 AWLRDSNATDVQREKLWTTQENDIERLREYRNKAS-------FKSDHVDEFHKLQKPFYG 505
           AWL     T  +  + W TQ N ++R  EY+   S        K DH D F KL++    
Sbjct: 294 AWLWPFAETRRKIVRSWATQMNIMDRYPEYQFVCSQALQYLWLKEDHPDVFEKLKEYVNQ 353

Query: 506 NGHIVYGGSF 515
           N  I  GGS+
Sbjct: 354 NKFIPIGGSW 363


>SPAC22E12.11c |set3||histone lysine methyltransferase
           Set3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 859

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 27/95 (28%), Positives = 40/95 (42%), Gaps = 8/95 (8%)

Query: 463 VQREKLWTTQENDIERLREYRNK--ASFKSDHVDEFHKLQKPFYGNGHIVYGGSFFYQAN 520
           +QRE+    Q   + R R   NK   SF  +     H    P  GN +    G+ F Q+ 
Sbjct: 66  LQREE---EQSRILSRSRSSNNKRRTSFGKNGASPTHSAS-PRQGN-NTGANGALFSQST 120

Query: 521 ESGQPGEIIRYDLTQSRIKSAHLPYADGRLYTSQH 555
            S   G   R  +T + + +AH P++  R   S H
Sbjct: 121 NSSNSGSY-RNSVTGATLPNAHAPHSQNRRRRSNH 154


>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 587

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 18/54 (33%), Positives = 21/54 (38%), Gaps = 2/54 (3%)

Query: 152 VPGEPGLDGMFGRNGADGAPGKDGRDGMPGKDGSPGKNGKDGKDGRPGAQGPPG 205
           +PG PG+  +         PG     GMP     PG        G PGA  PPG
Sbjct: 508 IPGAPGMPNLNMSQPPMVPPGMALPPGMPAP--FPGYPAVPAMPGIPGATAPPG 559


>SPBC83.05 |||mitochondrial RNA-binding protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 773

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 11/28 (39%), Positives = 21/28 (75%), Gaps = 1/28 (3%)

Query: 459 NATDVQREKLWTTQENDIERLREYRNKA 486
           N T++ +  +WTT+E D E+L+E+ ++A
Sbjct: 309 NGTNI-KAPIWTTREKDCEQLKEWLDEA 335


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 22/48 (45%), Positives = 22/48 (45%), Gaps = 8/48 (16%)

Query: 140 FPGNPGLDGRDGVPGEPGLDGMFGRNGADGAPGKDGRDGMPGKDGSPG 187
           F G PG  G  G PG  G  G  G  G  G PG  G  G PG  G PG
Sbjct: 233 FEGGPG--GFGGGPG--GFGG--GLGGFGGGPG--GFGGGPGGHGGPG 272



 Score = 27.5 bits (58), Expect = 6.3
 Identities = 23/58 (39%), Positives = 25/58 (43%), Gaps = 4/58 (6%)

Query: 148 GRDGVPGEPGLDGMFGRNGADG--APGKDGRDGMPGK-DGSPGKNGKDGKDGRPGAQG 202
           G  G P  PG  G FG  G +G    G  G  G PG  +G PG  G  G  G  G  G
Sbjct: 196 GSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGPGGFG-GGPGGFGGGLG 252


>SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 261

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 7/55 (12%)

Query: 436 YAIGKPVYHRYKEELFGAWLRDSNATDVQREKLWTTQENDIERLREYRNKASFKS 490
           + IG P    YK         D+  +D++RE    T+   IER+R  RNK + KS
Sbjct: 93  HVIGDP----YKTMFLSRLSYDTKESDIERE---FTRYGPIERIRVVRNKVTGKS 140


>SPAC6B12.12 |tom70||mitochondrial TOM complex subunit
           Tom70|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 625

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 28/113 (24%), Positives = 47/113 (41%), Gaps = 9/113 (7%)

Query: 450 LFGAWLRDSNATDVQREKLWTTQENDIERLREYRNK---ASFKSDHVDEFHKLQKPFYGN 506
           +F  +  +S    V+R      ++     L+E   K   ASF   ++D FH   KP + N
Sbjct: 246 IFDGFANESMTATVERLLKKVAEKKSSALLKERPPKLPAASFIQTYLDSFHAQPKPLFDN 305

Query: 507 GHIVYGGSFFYQANESGQPGEIIRYDLTQSRIKSAHL-PYADGRLYTSQHNQV 558
                G +   +A E  + GE   Y L+  + K + L  ++   +    HN V
Sbjct: 306 K--FDGDAALAEAYEYLEKGE---YQLSYDKAKESCLGSFSSPSVNARTHNLV 353


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.316    0.137    0.432 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,166,270
Number of Sequences: 5004
Number of extensions: 137589
Number of successful extensions: 269
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 264
Number of HSP's gapped (non-prelim): 16
length of query: 665
length of database: 2,362,478
effective HSP length: 77
effective length of query: 588
effective length of database: 1,977,170
effective search space: 1162575960
effective search space used: 1162575960
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 57 (27.1 bits)