Silkworm BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001978-TA|BGIBMGA001978-PA|IPR004837|Sodium/calcium
exchanger membrane region, IPR004481|K+-dependent Na+/Ca+ exchanger
related-protein
         (350 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292323-1|CAL23135.2|  587|Tribolium castaneum gustatory recept...    27   0.15 
S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Triboliu...    23   2.5  
AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5 prot...    23   3.3  
AM292382-1|CAL23194.2|  670|Tribolium castaneum gustatory recept...    23   3.3  
AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    22   5.8  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    22   5.8  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    22   7.7  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    22   7.7  

>AM292323-1|CAL23135.2|  587|Tribolium castaneum gustatory receptor
           candidate 2 protein.
          Length = 587

 Score = 27.5 bits (58), Expect = 0.15
 Identities = 19/62 (30%), Positives = 32/62 (51%), Gaps = 3/62 (4%)

Query: 229 LTLLAAGTSVPDLITSVIVARKGFGDMAVSSSVGSNIFDVTVGLPLPWLLYGLINSEPVL 288
           LTL +  T + +L     + + G  D+A++   G N F +T GL L ++ Y +     +L
Sbjct: 350 LTLNSVPTEIYNLEIQRFIQQIGNSDIAIT---GKNFFSITRGLILSFVDYFVFLLCSIL 406

Query: 289 VN 290
           VN
Sbjct: 407 VN 408


>S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Tribolium
           castaneum homeodomainprotein mRNA, complete cds. ).
          Length = 327

 Score = 23.4 bits (48), Expect = 2.5
 Identities = 11/40 (27%), Positives = 22/40 (55%), Gaps = 4/40 (10%)

Query: 138 IEEIGDLEEDTTPLDMSWPSGFRKRLTYVLVAPIVFPLWI 177
           + E+G +EE   P+D+S     +K  +     P+++P W+
Sbjct: 159 VPEVGGVEEAKGPVDLSKSEPEKKTES----QPMLWPAWV 194


>AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5
           protein.
          Length = 533

 Score = 23.0 bits (47), Expect = 3.3
 Identities = 7/26 (26%), Positives = 16/26 (61%)

Query: 35  HDAWKFYRLLIDLPIEQFVNFRCQQK 60
           HD W + +L ++  ++ +V++ C  K
Sbjct: 235 HDQWAYEKLNVNDGLQLWVDYGCSPK 260


>AM292382-1|CAL23194.2|  670|Tribolium castaneum gustatory receptor
           candidate 61 protein.
          Length = 670

 Score = 23.0 bits (47), Expect = 3.3
 Identities = 11/32 (34%), Positives = 19/32 (59%), Gaps = 2/32 (6%)

Query: 279 YGLINSEPVLVNSKGMVCSIVLLFAMLIFVIL 310
           +G    + VL  +K   C+ ++LF + +FVIL
Sbjct: 307 FGKTGRKTVLKTNK--YCNFIILFYLSVFVIL 336


>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
            variant 2 protein.
          Length = 1558

 Score = 22.2 bits (45), Expect = 5.8
 Identities = 7/23 (30%), Positives = 13/23 (56%)

Query: 144  LEEDTTPLDMSWPSGFRKRLTYV 166
            L+ +   + + WP G R  +TY+
Sbjct: 1286 LQLNKDQIHVKWPLGVRTNITYI 1308


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase CHS1B
            protein.
          Length = 1558

 Score = 22.2 bits (45), Expect = 5.8
 Identities = 7/23 (30%), Positives = 13/23 (56%)

Query: 144  LEEDTTPLDMSWPSGFRKRLTYV 166
            L+ +   + + WP G R  +TY+
Sbjct: 1286 LQLNKDQIHVKWPLGVRTNITYI 1308


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
            variant 1 protein.
          Length = 1558

 Score = 21.8 bits (44), Expect = 7.7
 Identities = 10/23 (43%), Positives = 12/23 (52%)

Query: 325  FTMFLLYFVFVAVSLGLEYDYLH 347
            F M    FV +   L L+ DYLH
Sbjct: 1272 FFMMNALFVLIVFLLTLKKDYLH 1294


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase CHS1A
            protein.
          Length = 1558

 Score = 21.8 bits (44), Expect = 7.7
 Identities = 10/23 (43%), Positives = 12/23 (52%)

Query: 325  FTMFLLYFVFVAVSLGLEYDYLH 347
            F M    FV +   L L+ DYLH
Sbjct: 1272 FFMMNALFVLIVFLLTLKKDYLH 1294


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.326    0.142    0.445 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 73,224
Number of Sequences: 317
Number of extensions: 3107
Number of successful extensions: 26
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 18
Number of HSP's gapped (non-prelim): 11
length of query: 350
length of database: 114,650
effective HSP length: 57
effective length of query: 293
effective length of database: 96,581
effective search space: 28298233
effective search space used: 28298233
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 44 (21.8 bits)