Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001978-TA|BGIBMGA001978-PA|IPR004837|Sodium/calcium
exchanger membrane region, IPR004481|K+-dependent Na+/Ca+ exchanger
related-protein
(350 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC3A12.06c |||sodium/calcium exchanger |Schizosaccharomyces po... 74 4e-14
SPCC285.07c |wtf18||wtf element Wtf18|Schizosaccharomyces pombe|... 36 0.009
SPCC1795.02c ||SPCC895.01|CaCA proton/calcium exchanger|Schizosa... 34 0.026
SPCC594.07c |||sequence orphan|Schizosaccharomyces pombe|chr 3||... 33 0.061
SPCC162.04c |wtf13||wtf element Wtf13|Schizosaccharomyces pombe|... 32 0.14
SPCC188.02 |par1||protein phosphatase regulatory subunit Par1 |S... 26 7.0
SPBC685.02 |||conserved eukaryotic protein|Schizosaccharomyces p... 26 9.2
SPAC1039.01 |||amino acid permease, unknown 5|Schizosaccharomyce... 26 9.2
>SPAC3A12.06c |||sodium/calcium exchanger |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 743
Score = 73.7 bits (173), Expect = 4e-14
Identities = 37/152 (24%), Positives = 80/152 (52%), Gaps = 2/152 (1%)
Query: 193 VTFIGSIVWIAFFSYLMVWWANVAGSTAQVPPEVMGLTLLAAGTSVPDLITSVIVARKGF 252
+ F+ I+WI+ + +V G + ++GLT+ AAG S+ DLI +++AR GF
Sbjct: 587 IGFVLGIIWISTIANEVVGILRALGVIFNLNESILGLTVFAAGNSLSDLIADIMIARSGF 646
Query: 253 GDMAVSSSVGSNIFDVTVGLPLPWLLYGLIN--SEPVLVNSKGMVCSIVLLFAMLIFVIL 310
+MA+ G ++ +G+ + + N ++ V+ + + L A L+ +++
Sbjct: 647 PEMAMGGVFGGPTLNILIGIGISSFYSSISNHGNDSVIEIPHSLSITAYFLLACLLLLLI 706
Query: 311 SIACFKWKMNKGLGFTMFLLYFVFVAVSLGLE 342
+ ++++N+ LG +F+LY V + ++ +E
Sbjct: 707 YVPLNRFRVNRVLGLLLFILYIVGTSTNIVVE 738
Score = 42.3 bits (95), Expect = 1e-04
Identities = 29/121 (23%), Positives = 55/121 (45%), Gaps = 2/121 (1%)
Query: 221 QVPPEVMGLTLLAAGTSVPDLITSVIVARKGFGDMAVSSSVGSNIFDVTVGLPLPWLLYG 280
Q+P V+G+T LA G PD++++ R G MA+ +GS F V + L+
Sbjct: 146 QLPDSVVGVTFLALGNGSPDILSTFAAVRVNSGGMAIGELLGSAFFIVAIVAGSVCLIKP 205
Query: 281 LINSEPVLVNSKGMVCSIVLLFAMLIFVILSIACFKWKMNKGLGFTMFLLYFVFVAVSLG 340
+ + +LL +++FV+ + W+ + + + + FVF + S G
Sbjct: 206 FKIPRRHFLRDVAFLTGTILL--VIMFVLHDGSLSIWQSLVMILYYLLYVLFVFFSGSSG 263
Query: 341 L 341
+
Sbjct: 264 V 264
>SPCC285.07c |wtf18||wtf element Wtf18|Schizosaccharomyces pombe|chr
3|||Manual
Length = 402
Score = 35.9 bits (79), Expect = 0.009
Identities = 51/197 (25%), Positives = 91/197 (46%), Gaps = 19/197 (9%)
Query: 160 RKRLTYVLVAPIVFPLWITL-PDTRTPRGKGLFPVTFIG---SIVWIAFFSYLMVWWANV 215
R ++ + V+ + F W+ + P ++ GK F VT IG I++IA F + W V
Sbjct: 89 RLLISVLAVSVVFFTAWVCVNPLEKSIFGKVAFSVT-IGITCPILFIATFCFFETWTQAV 147
Query: 216 AGS---TAQVPPEVMGLTLLAAGTSVPDLITSVIVARKGFGDMAVSSSVGSNIFDVTVGL 272
A T + + +T++ V +T+V +A K +AV VT+ L
Sbjct: 148 AQCIKVTVIFLAQCVKVTVIFLAQCVK--VTAVFLA-KCVKVIAVGLYNSKKDLVVTIWL 204
Query: 273 P---LPWLLYGLINSEPVLVNSKGMVCSIVLLFAMLIFVILSIACFKWKMNKGLGFTMFL 329
+ ++L+G + + +N K ++CS + A L F++L + W + K + F +F
Sbjct: 205 AWVVICFILFGCVKDGRLNLN-KALICSTCSISAALFFILLLVCIPIWTL-KHMLFGLFQ 262
Query: 330 LYFV---FVAVSLGLEY 343
+ V V V+ GL Y
Sbjct: 263 VLGVQSCVVIVTKGLMY 279
>SPCC1795.02c ||SPCC895.01|CaCA proton/calcium
exchanger|Schizosaccharomyces pombe|chr 3|||Manual
Length = 412
Score = 34.3 bits (75), Expect = 0.026
Identities = 19/91 (20%), Positives = 48/91 (52%), Gaps = 1/91 (1%)
Query: 227 MGLTLLAAGTSVPDLITSVIVARKGFGDMAVSSSVGSNIFDVTVGLPLPWLLYGLINSEP 286
+GL +L + + +T+++V+ +G D+A+ ++GS+I + + L ++ G I S+P
Sbjct: 301 VGLVILPVVGNAAEHVTAIVVSYRGQMDLALGVAIGSSI-QIALFLAPFLVIVGWIISQP 359
Query: 287 VLVNSKGMVCSIVLLFAMLIFVILSIACFKW 317
+ + + + I+ + L+ ++ W
Sbjct: 360 LTLYFESLETVILFVSVFLVNYLIQDGATHW 390
>SPCC594.07c |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 255
Score = 33.1 bits (72), Expect = 0.061
Identities = 25/80 (31%), Positives = 41/80 (51%), Gaps = 4/80 (5%)
Query: 263 SNIFDVTVGLPLPWLLYGLIN--SEPVLVNSKGMVCSIVLLFAMLIFVILSI--ACFKWK 318
SN V++ L L L YGL+N P L+ S G+V S + + + +I+ + + K
Sbjct: 10 SNTIKVSIYLFLHTLTYGLLNYHLNPRLLASTGVVESDIPYWMSYLSIIMHVGQSLLLQK 69
Query: 319 MNKGLGFTMFLLYFVFVAVS 338
N G G+ + Y V+V +S
Sbjct: 70 FNLGYGWLLLTKYPVYVLLS 89
>SPCC162.04c |wtf13||wtf element Wtf13|Schizosaccharomyces pombe|chr
3|||Manual
Length = 418
Score = 31.9 bits (69), Expect = 0.14
Identities = 54/207 (26%), Positives = 94/207 (45%), Gaps = 28/207 (13%)
Query: 160 RKRLTYVLVAPIVFPLWITL-PDTRTPRGKGLFPVTFIG---SIVWIAFFSYLMVWWANV 215
R ++ + V + F W+ + P ++ GK F VT IG IV+IA F + W V
Sbjct: 88 RLLISVLAVIVVFFTAWVCVNPLEKSIFGKVAFSVT-IGITCPIVFIAIFCFFETWTQAV 146
Query: 216 AGS---TAQVPPEVMGLTLLAAGTSVPDLITSVIVAR-----KGFGDMAVSS-SVG--SN 264
A T + + +T ++ V +T+V +A+ F V +VG ++
Sbjct: 147 AQCIKVTVIFLAQCVKVTAISLAQCVK--VTAVFLAKCVKVTAVFLAKCVKVIAVGLYNS 204
Query: 265 IFDVTVGLPLPW-----LLYGLINSEPVLVNSKGMVCSIVLLFAMLIFVILSIACFKWKM 319
D+ V + L W +L+G + + +N K ++CS + A L F++L + W +
Sbjct: 205 KKDLVVTIWLAWVVICFILFGCVKDGRLNLN-KALICSTCSISAALFFILLLVCIPIWTL 263
Query: 320 NKGLGFTMFLLYFV---FVAVSLGLEY 343
K + F +F + V V V+ GL Y
Sbjct: 264 -KHMLFGLFQVLGVQSCVVIVTKGLMY 289
>SPCC188.02 |par1||protein phosphatase regulatory subunit Par1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 548
Score = 26.2 bits (55), Expect = 7.0
Identities = 10/17 (58%), Positives = 13/17 (76%)
Query: 140 EIGDLEEDTTPLDMSWP 156
EI DLEED L+++WP
Sbjct: 195 EIMDLEEDEPALEVAWP 211
>SPBC685.02 |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 409
Score = 25.8 bits (54), Expect = 9.2
Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
Query: 134 QLDAIEEIGDLEEDTTPL--DMSWPSGFRKRLTYVLVAPIVFPLW 176
QL EI LE++ + + S FRK Y+ V +V PLW
Sbjct: 41 QLLVSREISKLEDEVCEMLKESSLFQLFRKHKGYLNVTDLVLPLW 85
>SPAC1039.01 |||amino acid permease, unknown 5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 567
Score = 25.8 bits (54), Expect = 9.2
Identities = 31/143 (21%), Positives = 60/143 (41%), Gaps = 13/143 (9%)
Query: 132 DVQLDAIEEIGDLEEDTTPLDMSWPSGFRKRLTYVLVAPIVFPLWITLPDTRTPRGKGLF 191
D + ++ GD++ ++ + FR++L+ + I F + LP + GL+
Sbjct: 34 DTHENFYDDQGDIDNPEELAELGYKQEFRRQLSLFGIFSISFSVLGMLPSVASTLVFGLW 93
Query: 192 PVTFIGSI-VWIAFFSYLMVWWANVAGSTAQVPPEVMGLTLLAAGTSVPDLITSVIVARK 250
V + G + W+ +L+ ++A + +P GL AA + A K
Sbjct: 94 YVGYPGLLWAWLIAMFFLICVSMSMAEICSAMPTS-GGLYYAAA-----------VFAPK 141
Query: 251 GFGDMAVSSSVGSNIFDVTVGLP 273
G+G +A + SN +G P
Sbjct: 142 GWGPLASWITGWSNYIGNIIGQP 164
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.326 0.142 0.445
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,409,979
Number of Sequences: 5004
Number of extensions: 55280
Number of successful extensions: 162
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 157
Number of HSP's gapped (non-prelim): 9
length of query: 350
length of database: 2,362,478
effective HSP length: 73
effective length of query: 277
effective length of database: 1,997,186
effective search space: 553220522
effective search space used: 553220522
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 54 (25.8 bits)
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