Silkworm BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001978-TA|BGIBMGA001978-PA|IPR004837|Sodium/calcium
exchanger membrane region, IPR004481|K+-dependent Na+/Ca+ exchanger
related-protein
         (350 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    23   3.9  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    23   3.9  
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    22   9.1  

>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 23.0 bits (47), Expect = 3.9
 Identities = 25/94 (26%), Positives = 38/94 (40%), Gaps = 4/94 (4%)

Query: 119 ETPLDLPNGGLAGDVQLDAIEEIGD---LEEDTTPLDMSWPSGFRKRLTYVLVAPIVFPL 175
           E P+ + NGG   D + +AI+ +      E  T P    W S     L+ V +A  +  L
Sbjct: 36  EPPVRVSNGGKEQDFRFEAIQCLQSSAFKEIKTLPDRGMWSSKIEFILSVVGLAIGLGNL 95

Query: 176 WITLPDTRTPRGKGLFPVTFIGSIVWIAFFSYLM 209
           W   P      G G F V +  ++       +LM
Sbjct: 96  W-RFPYLCYKNGGGAFMVPYFIALALAGVPMFLM 128


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 23.0 bits (47), Expect = 3.9
 Identities = 8/22 (36%), Positives = 14/22 (63%)

Query: 322 GLGFTMFLLYFVFVAVSLGLEY 343
           GLG+ + +LY +F  + L L +
Sbjct: 132 GLGWLLLMLYLLFATLPLRLSF 153


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 21.8 bits (44), Expect = 9.1
 Identities = 8/17 (47%), Positives = 12/17 (70%)

Query: 271 GLPLPWLLYGLINSEPV 287
           G+ + WLL GLI+  P+
Sbjct: 145 GIAVVWLLAGLISFVPI 161


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.326    0.142    0.445 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 85,330
Number of Sequences: 429
Number of extensions: 3593
Number of successful extensions: 7
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 5
Number of HSP's gapped (non-prelim): 3
length of query: 350
length of database: 140,377
effective HSP length: 58
effective length of query: 292
effective length of database: 115,495
effective search space: 33724540
effective search space used: 33724540
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 44 (21.8 bits)