GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001978-TA|BGIBMGA001978-PA|IPR004837|Sodium/calcium
exchanger membrane region, IPR004481|K+-dependent Na+/Ca+ exchanger
related-protein
         (350 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_42413| Best HMM Match : No HMM Matches (HMM E-Value=.)             155   4e-38
SB_28247| Best HMM Match : Na_Ca_ex (HMM E-Value=2e-27)               152   4e-37
SB_42414| Best HMM Match : No HMM Matches (HMM E-Value=.)             149   4e-36
SB_45810| Best HMM Match : Na_Ca_ex (HMM E-Value=0)                   125   6e-29
SB_43713| Best HMM Match : Na_Ca_ex (HMM E-Value=7.9e-32)              40   0.002
SB_22632| Best HMM Match : No HMM Matches (HMM E-Value=.)              34   0.20 
SB_8443| Best HMM Match : Calx-beta (HMM E-Value=0)                    34   0.20 
SB_44420| Best HMM Match : Calx-beta (HMM E-Value=2e-22)               33   0.26 
SB_15681| Best HMM Match : Na_Ca_ex (HMM E-Value=1.9e-36)              31   1.4  
SB_46179| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.4  
SB_39138| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.6  
SB_57886| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   7.5  
SB_37392| Best HMM Match : MARVEL (HMM E-Value=4.8e-08)                28   9.9  

>SB_42413| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 639

 Score =  155 bits (377), Expect = 4e-38
 Identities = 74/189 (39%), Positives = 124/189 (65%), Gaps = 3/189 (1%)

Query: 156 PSGFRKRLTYVLVAPIVFPLWITLPDTRTPRGKGLFPVTFIGSIVWIAFFSYLMVWWANV 215
           PS F KR+ ++ + P+    ++T+PD R  + +  +P TF  SI+W+A  SY++VW  ++
Sbjct: 414 PSTFSKRIVWIFMLPVHLAFYVTMPDCRVKKWEAWYPATFALSIIWMAALSYVLVWTVSI 473

Query: 216 AGSTAQVPPEVMGLTLLAAGTSVPDLITSVIVARKGFGDMAVSSSVGSNIFDVTVGLPLP 275
            G T  +P  +MGLTLLAAG+SVPD+++S+IVA+ G GDMA+++ +GSNIFDV + L LP
Sbjct: 474 IGETFSIPEYIMGLTLLAAGSSVPDVMSSLIVAKHGMGDMALANCIGSNIFDV-LCLGLP 532

Query: 276 WLL--YGLINSEPVLVNSKGMVCSIVLLFAMLIFVILSIACFKWKMNKGLGFTMFLLYFV 333
           WLL    +  +  VL++S  +V   + LF  ++ ++ +I    W++++ LG  +F+ Y  
Sbjct: 533 WLLATTAVHPNSVVLIHSGHIVYVSMCLFGTVLTIVSAIHLNGWRLDRRLGVILFIAYAF 592

Query: 334 FVAVSLGLE 342
           F+  ++ LE
Sbjct: 593 FLTSAVILE 601



 Score = 46.4 bits (105), Expect = 3e-05
 Identities = 28/114 (24%), Positives = 58/114 (50%)

Query: 221 QVPPEVMGLTLLAAGTSVPDLITSVIVARKGFGDMAVSSSVGSNIFDVTVGLPLPWLLYG 280
           ++P +V G T +AAG+S+P L  ++     G GD+ + + +GS++F++     +  L  G
Sbjct: 84  RIPTDVAGATFMAAGSSMPTLFIAIASVFMGEGDIGLGTIIGSSMFNILFITAICGLFSG 143

Query: 281 LINSEPVLVNSKGMVCSIVLLFAMLIFVILSIACFKWKMNKGLGFTMFLLYFVF 334
           ++ S       +     +V L  +LI +  ++  F   +   + +T ++L  VF
Sbjct: 144 MVISLHTWPIVRDSCVYVVNLVGLLIVIHDNVIHFYEALIFPVLYTGYILIMVF 197


>SB_28247| Best HMM Match : Na_Ca_ex (HMM E-Value=2e-27)
          Length = 236

 Score =  152 bits (369), Expect = 4e-37
 Identities = 76/202 (37%), Positives = 120/202 (59%), Gaps = 2/202 (0%)

Query: 143 DLEEDTTPLDMSWPSGFRKRLTYVLVAPIVFPLWITLPDTRTPRGKGLFPVTFIGSIVWI 202
           D+ + T     S P     R+ +VL  PI    ++T+PD + P  +    ++FI  IVWI
Sbjct: 19  DVPDLTLGSPFSPPENVWPRICWVLGLPINLSFFLTIPDVKKPSCEKWVVLSFIICIVWI 78

Query: 203 AFFSYLMVWWANVAGSTAQVPPEVMGLTLLAAGTSVPDLITSVIVARKGFGDMAVSSSVG 262
              SY++VW   V G T  +P  VMGL+L+A G+SVPD ++S+ VARKG GDMAVS +VG
Sbjct: 79  GVTSYVLVWMVTVIGYTFLIPDSVMGLSLVAFGSSVPDCLSSLFVARKGDGDMAVSHTVG 138

Query: 263 SNIFDVTVGLPLPWLLYGLI--NSEPVLVNSKGMVCSIVLLFAMLIFVILSIACFKWKMN 320
           SN+FD+ + L +PWL+   +      V++NS G+  S   +   +   ++ I  +KW +N
Sbjct: 139 SNVFDILLCLGIPWLIKTTVWEYDSSVVINSHGLFISCFFILGSIAVTLIIIWYYKWTLN 198

Query: 321 KGLGFTMFLLYFVFVAVSLGLE 342
           K +G    + YF+F+++S+ +E
Sbjct: 199 KKVGCIYLVFYFIFMSISVVVE 220


>SB_42414| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 360

 Score =  149 bits (360), Expect = 4e-36
 Identities = 76/219 (34%), Positives = 126/219 (57%), Gaps = 5/219 (2%)

Query: 126 NGGLAGDVQLDAIEEIGDLEEDTTPLDMSWPSGFRKRLTYVLVAPIVFPLWITLPDTRTP 185
           +GG   + +L+  E+ G    DT    +  P G   R  +V   P +   ++T+PD R  
Sbjct: 134 DGGEESEDELNKSEDWGF--HDTPRTRLKPPEGACARALWVFTLPSILVFYVTIPDCRKK 191

Query: 186 RGKGLFPVTFIGSIVWIAFFSYLMVWWANVAGSTAQVPPEVMGLTLLAAGTSVPDLITSV 245
             +  + VTF  +++W+A  SY +VW   + G T  +P  VMG+T LAAG+S+PD I S+
Sbjct: 192 TWRKFYLVTFTVAVIWMAVLSYFLVWMVAIIGYTYTIPECVMGMTFLAAGSSLPDAIASL 251

Query: 246 IVARKGFGDMAVSSSVGSNIFDVTVGLPLPWLLYG--LINSEPVLVNSKGMVCSIVLLFA 303
           +VA++G GDMAVS+ +GSN+FD+ + L +PWL+    L   +PV++ S+ +  +  +L  
Sbjct: 252 VVAKQGSGDMAVSNCIGSNVFDM-LCLGIPWLIKSAFLQPGKPVVIQSENIFFTSAMLIG 310

Query: 304 MLIFVILSIACFKWKMNKGLGFTMFLLYFVFVAVSLGLE 342
            +    L I   KWK+N  +G    ++YF+F+ V+  +E
Sbjct: 311 SIAVTFLLIQFNKWKLNVKVGIAFLIMYFLFLIVATYIE 349


>SB_45810| Best HMM Match : Na_Ca_ex (HMM E-Value=0)
          Length = 582

 Score =  125 bits (301), Expect = 6e-29
 Identities = 71/186 (38%), Positives = 112/186 (60%), Gaps = 15/186 (8%)

Query: 165 YVLVAPIVFPLWITLPDTRTPRGKGLFPVTFIGSIVWIAFFSYLMVWWANVAGSTAQVPP 224
           +VL  P V     T+PD   P  +  F  +F  SIVWIA  S+ +V     +G    V  
Sbjct: 383 FVLSFPFVCLYTWTIPDCSKPHNRKWFLASFTMSIVWIAILSFGLVTVVGRSGCILNVDK 442

Query: 225 EVMGLTLLAAGTSVPDLITSVIVARKGFGDMAVSSSVGSNIFDVTVGLPLPWLLYGLIN- 283
             MGL ++A GTSVPD ++S+IVAR GFGDMAVS+++GSN+FD+ +GL LP+++  LI+ 
Sbjct: 443 FTMGLVIIAIGTSVPDALSSIIVARDGFGDMAVSNAIGSNVFDINLGLGLPFVIRILIDK 502

Query: 284 ---------SEPVLVNSKGMVCS--IVLLFAMLIFVILSI---ACFKWKMNKGLGFTMFL 329
                    +E +++ +  +V S  +   F +L+F+++++   A FK+K+NK LG +   
Sbjct: 503 MEPIRMLTPAEEIMLETGEIVISPHVKFGFLLLLFLVIALFLMAAFKFKLNKRLGLSFVF 562

Query: 330 LYFVFV 335
           +Y +FV
Sbjct: 563 MYVLFV 568



 Score = 36.3 bits (80), Expect = 0.037
 Identities = 20/50 (40%), Positives = 30/50 (60%), Gaps = 1/50 (2%)

Query: 225 EVMGLTLLAAGTSVPDLITSVIVARKGFGDMAVSSSVGSNIFDVTVGLPL 274
           +V G T +AAG+S P+L TS+        D+ V + VGS IF++ V + L
Sbjct: 55  DVAGATFMAAGSSAPELFTSIAGVTVD-SDVGVGTIVGSAIFNLLVIIAL 103


>SB_43713| Best HMM Match : Na_Ca_ex (HMM E-Value=7.9e-32)
          Length = 228

 Score = 40.3 bits (90), Expect = 0.002
 Identities = 26/113 (23%), Positives = 57/113 (50%), Gaps = 6/113 (5%)

Query: 225 EVMGLTLLAAGTSVPDLITSVIVARKGFGDMAVSSSVGSNIFDVTVGLPLPWLLYGLINS 284
           +V G T +AAG+S P+  TSVI      GD+ + + VGS +F++   + +  +  G + +
Sbjct: 50  DVAGATFMAAGSSAPEFFTSVIGVFITKGDIGIGTIVGSAVFNILFIVAICGMFAGSVLT 109

Query: 285 EPVLVNSKGMVCSIVLLFAMLIFVILSIACFKWKMNKGLGFTMFLLYFVFVAV 337
                 ++   C ++ + A++I        +  +++   G  + L+Y ++V +
Sbjct: 110 LSWWPLTRDSFCYMLSVAALVIIT------YDKEVHWYEGMALVLMYLLYVTI 156


>SB_22632| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 730

 Score = 33.9 bits (74), Expect = 0.20
 Identities = 22/67 (32%), Positives = 33/67 (49%), Gaps = 5/67 (7%)

Query: 275 PWLLYGLINSEPVLVNSKGMVCSIVLLFAMLIFVILSIACFKWKMNKGLGFTMFLLYFVF 334
           PW  +G  +S+  + NSK  V  +VL      FV L I      +  GLG+  + +Y  F
Sbjct: 414 PWFPFGKASSK--INNSKPFVTMVVLAIPFYAFVFLEILQV---VETGLGYIGWSIYMGF 468

Query: 335 VAVSLGL 341
           VA + G+
Sbjct: 469 VAYATGI 475


>SB_8443| Best HMM Match : Calx-beta (HMM E-Value=0)
          Length = 694

 Score = 33.9 bits (74), Expect = 0.20
 Identities = 20/48 (41%), Positives = 30/48 (62%), Gaps = 3/48 (6%)

Query: 226 VMGLTLLAAGTSVPDLITSVI-VARKGF--GDMAVSSSVGSNIFDVTV 270
           V  LTL+A G+S P+++ SVI +    F  GD+  S+ VGS  F++ V
Sbjct: 66  VSNLTLMALGSSAPEILLSVIEIIGNNFKAGDLGPSTIVGSAAFNLFV 113



 Score = 31.1 bits (67), Expect = 1.4
 Identities = 15/45 (33%), Positives = 26/45 (57%)

Query: 195 FIGSIVWIAFFSYLMVWWANVAGSTAQVPPEVMGLTLLAAGTSVP 239
           F+ SI+WI   + ++   A+  G T  +   V+ +T +A GTS+P
Sbjct: 649 FVVSILWIGVLTAVIGDLASHFGCTIYLADSVVAITFVALGTSLP 693


>SB_44420| Best HMM Match : Calx-beta (HMM E-Value=2e-22)
          Length = 461

 Score = 33.5 bits (73), Expect = 0.26
 Identities = 33/129 (25%), Positives = 61/129 (47%), Gaps = 7/129 (5%)

Query: 226 VMGLTLLAAGTSVPDLITSV--IVARKGF--GDMAVSSSVGSNIFDVTVGLPLPWLLYGL 281
           V  LTL+A G+S P+++ S+  I    GF  G +  S+ VGS  F++     +  +    
Sbjct: 98  VANLTLMALGSSAPEILLSIIEITIMNGFEAGALGPSTIVGSAAFNLLCITGVCVMAVPK 157

Query: 282 INSEPVLVNSKGMVCSIVLLFAML-IFVILSIACFKWKMNKGLGFTMFLLYFVFVAVSLG 340
             +  +   +   V +I  L A + +F+ILS+   K  +        FL + + V ++  
Sbjct: 158 FETRRIKSMNVFAVTAITSLLAYIWLFIILSVNT-KDVVELWEAILTFLFFPILVIIAYI 216

Query: 341 LEYDYLHCP 349
           ++ +Y  CP
Sbjct: 217 MDKNYC-CP 224


>SB_15681| Best HMM Match : Na_Ca_ex (HMM E-Value=1.9e-36)
          Length = 183

 Score = 31.1 bits (67), Expect = 1.4
 Identities = 17/49 (34%), Positives = 28/49 (57%), Gaps = 1/49 (2%)

Query: 221 QVPPEVMGLTLLAAGTSVPDLITSVI-VARKGFGDMAVSSSVGSNIFDV 268
           ++  +V G T +AAG S P+L TS I        ++ + + VGS +F+V
Sbjct: 28  ELKEDVAGATFMAAGGSAPELFTSFIGTFIDPKSNVGIGTIVGSAVFNV 76


>SB_46179| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4856

 Score = 30.3 bits (65), Expect = 2.4
 Identities = 18/40 (45%), Positives = 24/40 (60%), Gaps = 2/40 (5%)

Query: 221 QVPPEVMGL--TLLAAGTSVPDLITSVIVARKGFGDMAVS 258
           Q+PPE      T LAAG+  P  I S  ++RKG+ DM +S
Sbjct: 682 QLPPEASKAVPTRLAAGSGSPARIHSPELSRKGYEDMNLS 721


>SB_39138| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 624

 Score = 29.1 bits (62), Expect = 5.6
 Identities = 12/30 (40%), Positives = 19/30 (63%)

Query: 321 KGLGFTMFLLYFVFVAVSLGLEYDYLHCPS 350
           KGL  ++ LL  +F+ +S  ++YD L  PS
Sbjct: 127 KGLSLSLLLLLLIFIILSPKVKYDTLSVPS 156


>SB_57886| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 97

 Score = 28.7 bits (61), Expect = 7.5
 Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 1/44 (2%)

Query: 217 GSTAQVPPEVMGLTLLAAGTSVPDLITSVIVARKGFG-DMAVSS 259
           G    +   V G+T++A GTS+PD + S   A +  G D A+ +
Sbjct: 51  GCVVDLRNSVTGITIIAIGTSLPDTMASRSAALQDTGADAAIGN 94


>SB_37392| Best HMM Match : MARVEL (HMM E-Value=4.8e-08)
          Length = 205

 Score = 28.3 bits (60), Expect = 9.9
 Identities = 19/71 (26%), Positives = 34/71 (47%), Gaps = 2/71 (2%)

Query: 280 GLINSEPVLVNSKGMVCSIVLLFAMLIFVIL--SIACFKWKMNKGLGFTMFLLYFVFVAV 337
           G  N   ++ + +G++  + LL   L FVI+   +   K+K+     F +F+    FV V
Sbjct: 17  GCCNCLWLVTSCEGLLKLLQLLATFLSFVIICGGLNSAKYKLEPKYDFMVFVGVTAFVFV 76

Query: 338 SLGLEYDYLHC 348
            L +    +HC
Sbjct: 77  GLHIILRMIHC 87


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.326    0.142    0.445 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,885,902
Number of Sequences: 59808
Number of extensions: 365971
Number of successful extensions: 992
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 975
Number of HSP's gapped (non-prelim): 17
length of query: 350
length of database: 16,821,457
effective HSP length: 83
effective length of query: 267
effective length of database: 11,857,393
effective search space: 3165923931
effective search space used: 3165923931
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 60 (28.3 bits)