GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001977-TA|BGIBMGA001977-PA|IPR004481|K+-dependent
Na+/Ca+ exchanger related-protein, IPR004837|Sodium/calcium exchanger
membrane region
         (254 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    27   0.18 
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    27   0.18 
AM292377-1|CAL23189.2|  358|Tribolium castaneum gustatory recept...    23   3.0  
AM292342-1|CAL23154.2|  386|Tribolium castaneum gustatory recept...    23   3.0  
AM292334-1|CAL23146.2|  390|Tribolium castaneum gustatory recept...    21   6.9  
AM292333-1|CAL23145.2|  316|Tribolium castaneum gustatory recept...    21   6.9  

>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
           protein.
          Length = 1464

 Score = 26.6 bits (56), Expect = 0.18
 Identities = 19/74 (25%), Positives = 34/74 (45%), Gaps = 6/74 (8%)

Query: 126 IGTIVGSAVFNILFVIGACAMFSRTTLSLTWWPLFRDCTFYSISLLVLIYCFRDNRIYWQ 185
           IGT++G     ++ V    A F     S  +W L     F    +LV   C  D ++++ 
Sbjct: 891 IGTVIGPGTIFLMLVGAFVAAFGLDQWSSFYWNLLPIAVF----ILVCATCSSDIQLFF- 945

Query: 186 EALVLFSLYGAYVM 199
            A ++ ++YG  +M
Sbjct: 946 -AGLISAIYGLIMM 958


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase
           CHS2 protein.
          Length = 1464

 Score = 26.6 bits (56), Expect = 0.18
 Identities = 19/74 (25%), Positives = 34/74 (45%), Gaps = 6/74 (8%)

Query: 126 IGTIVGSAVFNILFVIGACAMFSRTTLSLTWWPLFRDCTFYSISLLVLIYCFRDNRIYWQ 185
           IGT++G     ++ V    A F     S  +W L     F    +LV   C  D ++++ 
Sbjct: 891 IGTVIGPGTIFLMLVGAFVAAFGLDQWSSFYWNLLPIAVF----ILVCATCSSDIQLFF- 945

Query: 186 EALVLFSLYGAYVM 199
            A ++ ++YG  +M
Sbjct: 946 -AGLISAIYGLIMM 958


>AM292377-1|CAL23189.2|  358|Tribolium castaneum gustatory receptor
           candidate 56 protein.
          Length = 358

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 9/27 (33%), Positives = 11/27 (40%)

Query: 149 RTTLSLTWWPLFRDCTFYSISLLVLIY 175
           +      WWPL R+     I L  L Y
Sbjct: 44  KKVFKFAWWPLTRNALLVLILLGALTY 70


>AM292342-1|CAL23154.2|  386|Tribolium castaneum gustatory receptor
           candidate 21 protein.
          Length = 386

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 9/27 (33%), Positives = 11/27 (40%)

Query: 149 RTTLSLTWWPLFRDCTFYSISLLVLIY 175
           +      WWPL R+     I L  L Y
Sbjct: 44  KKVFKFAWWPLTRNALLVLILLGALTY 70


>AM292334-1|CAL23146.2|  390|Tribolium castaneum gustatory receptor
           candidate 13 protein.
          Length = 390

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 7/18 (38%), Positives = 13/18 (72%)

Query: 151 TLSLTWWPLFRDCTFYSI 168
           TLS  ++P+F  C +++I
Sbjct: 344 TLSAHYFPVFSACDYFTI 361


>AM292333-1|CAL23145.2|  316|Tribolium castaneum gustatory receptor
           candidate 12 protein.
          Length = 316

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 7/18 (38%), Positives = 13/18 (72%)

Query: 151 TLSLTWWPLFRDCTFYSI 168
           TLS  ++P+F  C +++I
Sbjct: 270 TLSTHYFPVFSACDYFTI 287


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.328    0.140    0.432 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 55,898
Number of Sequences: 317
Number of extensions: 2328
Number of successful extensions: 12
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 4
Number of HSP's gapped (non-prelim): 8
length of query: 254
length of database: 114,650
effective HSP length: 55
effective length of query: 199
effective length of database: 97,215
effective search space: 19345785
effective search space used: 19345785
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.7 bits)
S2: 42 (21.0 bits)