Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001977-TA|BGIBMGA001977-PA|IPR004481|K+-dependent
Na+/Ca+ exchanger related-protein, IPR004837|Sodium/calcium exchanger
membrane region
(254 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC3A12.06c |||sodium/calcium exchanger |Schizosaccharomyces po... 66 4e-12
SPCC1795.02c ||SPCC895.01|CaCA proton/calcium exchanger|Schizosa... 49 6e-07
SPCC777.04 |||amino acid transporter |Schizosaccharomyces pombe|... 28 1.5
SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce... 26 6.1
SPBC660.10 |||translation elongation factor G|Schizosaccharomyce... 26 6.1
SPAC22G7.05 |||krr family protein|Schizosaccharomyces pombe|chr ... 25 8.1
SPAC1F7.07c |fip1||iron permease Fip1|Schizosaccharomyces pombe|... 25 8.1
>SPAC3A12.06c |||sodium/calcium exchanger |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 743
Score = 66.5 bits (155), Expect = 4e-12
Identities = 38/138 (27%), Positives = 69/138 (50%), Gaps = 3/138 (2%)
Query: 65 YMFVALAIVCDEFFVPALDVIIERLEIRDDVAGATFMAAGGSAPELFTSVIGVFVSFDDV 124
++F+ + I +FF L I L++ D V G TF+A G +P++ ++ V V+ +
Sbjct: 121 FLFITIGISASDFFSTNLVTISWLLQLPDSVVGVTFLALGNGSPDILSTFAAVRVNSGGM 180
Query: 125 GIGTIVGSAVFNILFVIGACAMFSRTTLSLTWWPLFRDCTFYS-ISLLVLIYCFRDNRIY 183
IG ++GSA F + V G+ + + RD F + LLV+++ D +
Sbjct: 181 AIGELLGSAFFIVAIVAGSVCLIK--PFKIPRRHFLRDVAFLTGTILLVIMFVLHDGSLS 238
Query: 184 WQEALVLFSLYGAYVMFM 201
++LV+ Y YV+F+
Sbjct: 239 IWQSLVMILYYLLYVLFV 256
Score = 37.9 bits (84), Expect = 0.001
Identities = 34/115 (29%), Positives = 52/115 (45%), Gaps = 14/115 (12%)
Query: 91 IRDDVAGATFMAAGGSAPELFTSVIGVFVSFDDVGIGTIVGSAVFNILFVIGACAMFSRT 150
+ + + G T AAG S +L ++ F ++ +G + G NIL IG + +S
Sbjct: 616 LNESILGLTVFAAGNSLSDLIADIMIARSGFPEMAMGGVFGGPTLNILIGIGISSFYSSI 675
Query: 151 TL----SLTWWPLFRDCTFY---SISLLVLIYC----FRDNRIYWQEALVLFSLY 194
+ S+ P T Y + LL+LIY FR NR+ L+LF LY
Sbjct: 676 SNHGNDSVIEIPHSLSITAYFLLACLLLLLIYVPLNRFRVNRVL---GLLLFILY 727
>SPCC1795.02c ||SPCC895.01|CaCA proton/calcium
exchanger|Schizosaccharomyces pombe|chr 3|||Manual
Length = 412
Score = 49.2 bits (112), Expect = 6e-07
Identities = 33/147 (22%), Positives = 67/147 (45%), Gaps = 7/147 (4%)
Query: 60 VLGMGYMFVALAIV------CDEFFVPALDVIIERLEIRDDVAGATFMAAGGSAPELFTS 113
+LG+ LAIV C ++ V ++D ++E + I G + G+A E T+
Sbjct: 259 ILGLRSSIAMLAIVTVFVSLCADYLVGSIDQLVEEVNISKTFVGLVILPVVGNAAEHVTA 318
Query: 114 VIGVFVSFDDVGIGTIVGSAVFNILFVIGACAMFS-RTTLSLTWWPLFRDCTFYSISLLV 172
++ + D+ +G +GS++ LF+ + + LT + + +S+ +
Sbjct: 319 IVVSYRGQMDLALGVAIGSSIQIALFLAPFLVIVGWIISQPLTLYFESLETVILFVSVFL 378
Query: 173 LIYCFRDNRIYWQEALVLFSLYGAYVM 199
+ Y +D +W E + L +LY V+
Sbjct: 379 VNYLIQDGATHWLEGVQLLALYAIVVL 405
Score = 27.1 bits (57), Expect = 2.6
Identities = 15/48 (31%), Positives = 25/48 (52%)
Query: 97 GATFMAAGGSAPELFTSVIGVFVSFDDVGIGTIVGSAVFNILFVIGAC 144
GA A+ G+A EL V+ + + +++GS + N+L V G C
Sbjct: 116 GALLNASFGNAIELIVGVLALKRGELRIVQSSLLGSILSNLLLVFGMC 163
>SPCC777.04 |||amino acid transporter |Schizosaccharomyces pombe|chr
3|||Manual
Length = 521
Score = 27.9 bits (59), Expect = 1.5
Identities = 25/76 (32%), Positives = 32/76 (42%), Gaps = 5/76 (6%)
Query: 104 GGSAPELFTSVIGVFVSFDDVGIGTI---VGSAVFNILFVIGACAMFSRTTLSLTWWPLF 160
G AP L G F+ F + + VGS V I F G +T ++ LF
Sbjct: 226 GAFAPYLVEGSTGRFLGFWACLVQSCFAYVGSEVVGIAF--GEAPNPEKTIRKSSFQSLF 283
Query: 161 RDCTFYSISLLVLIYC 176
R TFY I + VL C
Sbjct: 284 RIATFYVIGVFVLGLC 299
>SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1666
Score = 25.8 bits (54), Expect = 6.1
Identities = 13/46 (28%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
Query: 185 QEALVLFSLYGAYVMFM--RWNQPVERAFKKLIYKNKVTRVRSTDQ 228
+ +L+ F AY+ RW Q +E + + YK+ + R +DQ
Sbjct: 1496 KHSLLEFRRIAAYIYRKNKRWTQSIELSKQDRFYKDAIITARDSDQ 1541
>SPBC660.10 |||translation elongation factor G|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 813
Score = 25.8 bits (54), Expect = 6.1
Identities = 10/24 (41%), Positives = 15/24 (62%)
Query: 203 WNQPVERAFKKLIYKNKVTRVRST 226
W Q +R K+I+ NK+ RV S+
Sbjct: 138 WKQATKRGIPKVIFVNKMDRVGSS 161
>SPAC22G7.05 |||krr family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 598
Score = 25.4 bits (53), Expect = 8.1
Identities = 13/29 (44%), Positives = 17/29 (58%)
Query: 212 KKLIYKNKVTRVRSTDQLMPTVSSPAHPL 240
KK+I N T +S DQL V+S +H L
Sbjct: 18 KKVINSNVPTDKKSIDQLQENVTSKSHLL 46
>SPAC1F7.07c |fip1||iron permease Fip1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 397
Score = 25.4 bits (53), Expect = 8.1
Identities = 15/49 (30%), Positives = 27/49 (55%), Gaps = 3/49 (6%)
Query: 189 VLFSLYGAYVMFMRWNQPVERAFKKLIYK--NKVTRVRSTDQLMPTVSS 235
+++ L+ A++MF+ W + RA + LI K +KV + + P SS
Sbjct: 298 IIYWLFVAFIMFLMWYKE-RRAARLLIAKLGDKVVDLEAASSHTPVQSS 345
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.328 0.140 0.432
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,066,900
Number of Sequences: 5004
Number of extensions: 42722
Number of successful extensions: 137
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 129
Number of HSP's gapped (non-prelim): 9
length of query: 254
length of database: 2,362,478
effective HSP length: 71
effective length of query: 183
effective length of database: 2,007,194
effective search space: 367316502
effective search space used: 367316502
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.7 bits)
S2: 53 (25.4 bits)
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