Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001977-TA|BGIBMGA001977-PA|IPR004481|K+-dependent
Na+/Ca+ exchanger related-protein, IPR004837|Sodium/calcium exchanger
membrane region
(254 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0564 - 4176177-4178096 57 2e-08
11_01_0292 - 2200714-2201478,2202691-2203395 55 6e-08
03_05_0545 + 25419031-25420758 51 1e-06
10_08_0133 + 15100049-15101836,15103344-15103382 44 2e-04
12_02_1175 + 26702744-26704507 36 0.024
04_04_1408 + 33349232-33349450,33349715-33349782,33349853-333498... 33 0.22
02_02_0634 + 12441374-12441383,12441991-12442187,12442270-124424... 33 0.30
12_02_0458 - 19244972-19245073,19245299-19245673,19245772-192458... 31 1.2
11_01_0045 + 346817-347168,347582-347713,347790-347968,348654-34... 30 2.1
04_04_1413 - 33386049-33386339 29 2.8
11_06_0626 - 25620409-25620706,25620814-25620943,25621034-256212... 29 4.8
02_05_0116 - 25976234-25976394,25976485-25976701,25977345-259774... 29 4.8
09_02_0577 - 10862976-10863215,10863653-10863788,10863906-108640... 28 6.4
09_02_0576 - 10853361-10853600,10854033-10854168,10854285-108544... 28 6.4
07_03_0668 + 20530607-20530785,20530897-20530959,20532100-205321... 28 6.4
06_03_1043 - 27097094-27097735 28 6.4
03_02_0140 + 5864612-5864955,5865154-5865381,5865460-5865814,586... 28 6.4
06_01_1135 - 9379361-9381018,9381356-9381665,9381811-9382764 28 8.4
>03_01_0564 - 4176177-4178096
Length = 639
Score = 56.8 bits (131), Expect = 2e-08
Identities = 38/159 (23%), Positives = 75/159 (47%), Gaps = 4/159 (2%)
Query: 60 VLG--MGYMFVALAIVCDEFFVPALDVIIERLEIRDDVAGATFMAAGGSAPELFTSVIGV 117
VLG + +F L ++F +L+ + L + VAG T + G AP++F S+
Sbjct: 133 VLGVCLAALFYMLGNTAADYFCCSLEKMSALLRLPPTVAGVTLLPFGNGAPDVFASIAAF 192
Query: 118 F-VSFDDVGIGTIVGSAVFNILFVIGACAM-FSRTTLSLTWWPLFRDCTFYSISLLVLIY 175
DVG+ +++G AVF V+GA ++ + + + RD F+ ++L+ L
Sbjct: 193 MGTGAGDVGLNSVLGGAVFVTCVVVGAVSLCVAEKNVQIDRRCFVRDVGFFLMTLVALSI 252
Query: 176 CFRDNRIYWQEALVLFSLYGAYVMFMRWNQPVERAFKKL 214
++ A++ S+Y Y + N+ + + ++L
Sbjct: 253 ILIVGKVTVWGAIMFVSIYVVYAFVVAANEVLRKHARRL 291
>11_01_0292 - 2200714-2201478,2202691-2203395
Length = 489
Score = 54.8 bits (126), Expect = 6e-08
Identities = 39/132 (29%), Positives = 59/132 (44%), Gaps = 5/132 (3%)
Query: 67 FVALAIVCDEFFVPALDVIIERLEIRDDVAGATFMAAGGSAPELFTS--VIGVFVSFDDV 124
F LA F PA+ + RL + +A T +A G AP+ F S +G
Sbjct: 50 FRVLAAAAGTHFSPAVSRLAARLRLSPSMAAVTLLALGNGAPDAFASAAALGGAGGMRRA 109
Query: 125 GIGTIVGSAVFNILFVIGACAMFSRTTLSLTWWPLFRDCTFYSISLLVLIYCFRDNRIY- 183
G+ I+ + F FV+GA A+ + ++ RD FY ++ L Y + IY
Sbjct: 110 GLAAILSAGAFVSAFVVGAVALIA-APFAVPPASFARDVFFYLLAASGLFYIYLSAEIYL 168
Query: 184 WQE-ALVLFSLY 194
WQ LVLF ++
Sbjct: 169 WQAIGLVLFYVF 180
>03_05_0545 + 25419031-25420758
Length = 575
Score = 50.8 bits (116), Expect = 1e-06
Identities = 39/149 (26%), Positives = 68/149 (45%), Gaps = 8/149 (5%)
Query: 60 VLGMGYMFVALAIVCDEFFVPALDVIIERLEIRDDVAGATFMAAGGSAPELFTSVIGVFV 119
VL + +F L E+F +L+ + L + +AG T ++ G AP++F SV+ F
Sbjct: 121 VLWLAVLFYLLGDTASEYFCASLEGLSAELRLPPAIAGVTLLSLGNGAPDVFASVVS-FA 179
Query: 120 SFD--DVGIGTIVGSAVFNILFVIGACAMFS-----RTTLSLTWWPLFRDCTFYSISLLV 172
+ D VG+ + +G A+F V G A+ + R + + RD F ++L
Sbjct: 180 AGDGGGVGLNSALGGALFVSTVVAGVVALAAASRAGRGGVVVELRGFVRDICFLLLALCS 239
Query: 173 LIYCFRDNRIYWQEALVLFSLYGAYVMFM 201
L+ + + SLY AYV+ +
Sbjct: 240 LLAILVTGTVTVWVSASFVSLYVAYVLLV 268
>10_08_0133 + 15100049-15101836,15103344-15103382
Length = 608
Score = 43.6 bits (98), Expect = 2e-04
Identities = 39/162 (24%), Positives = 68/162 (41%), Gaps = 9/162 (5%)
Query: 45 VFSEEQRRSGAVLLHVLGMGYMFVALAIVCDEFFVPALDVIIERLEIRDDVAGATFMAAG 104
VF EE+R G ++ + +F L +F +L+ + L + +AG T ++ G
Sbjct: 109 VFGEERRVLGYAVM-AAWLAVLFYLLGDTAAVYFCSSLEGLSRLLRLSPAIAGVTLLSLG 167
Query: 105 GSAPELFTSVIGVFVS------FDDVGIGTIVGSAVFNILFVIGACAM-FSRTTLSLTWW 157
AP+ S I F S VG+ ++GSA+ V+G + +++
Sbjct: 168 NGAPDAL-STIASFASGGGEGETTAVGLNGVLGSAMLVSSAVLGVIGVRLGARGVAVDRV 226
Query: 158 PLFRDCTFYSISLLVLIYCFRDNRIYWQEALVLFSLYGAYVM 199
+RD +F +L + + AL SLY YV+
Sbjct: 227 DFYRDASFLLAALAAVAVVLAAGEVTIWGALAFTSLYVVYVV 268
>12_02_1175 + 26702744-26704507
Length = 587
Score = 36.3 bits (80), Expect = 0.024
Identities = 34/154 (22%), Positives = 61/154 (39%), Gaps = 18/154 (11%)
Query: 66 MFVALAIVCDEFFVPALDVIIERLEIRDDVAGATFMAAGGSAPELFTSVI---------- 115
+F L +F +L+ + L + +AG T ++ G AP++ +SV+
Sbjct: 121 LFYLLGDTASAYFCASLEGLSAVLRLPPAIAGVTLLSLGNGAPDVLSSVVAFAAGARGGD 180
Query: 116 ---GVFVSFDDVGIGTIVGSAVFNILFVIGACAMFS-----RTTLSLTWWPLFRDCTFYS 167
G DVG+ ++G A+F V G A+ + + + RD F
Sbjct: 181 GGGGGGEDAGDVGLSGVLGGALFVSTVVAGVVAIVAGRRGGGEPVIIERRGFVRDVCFLL 240
Query: 168 ISLLVLIYCFRDNRIYWQEALVLFSLYGAYVMFM 201
++L L+ + A SLY YV+ +
Sbjct: 241 VALCYLLAVLLTGAVTVWSAASFLSLYAGYVLLV 274
>04_04_1408 +
33349232-33349450,33349715-33349782,33349853-33349881,
33349973-33350169,33350247-33350459,33350621-33350755,
33351122-33351238,33351332-33351385,33351574-33351690,
33352199-33352292,33352575-33352585
Length = 417
Score = 33.1 bits (72), Expect = 0.22
Identities = 33/167 (19%), Positives = 67/167 (40%), Gaps = 5/167 (2%)
Query: 31 NATEDAKTPLFPPDVFSEEQRRSGAVLLHVLGMGYMFVALAIVCDEFFVPALDVIIERLE 90
NA + P + +EE S + + M + E+ V A++ + L
Sbjct: 235 NAYSPIGSEEMPNEDAAEEDEESEIGMWESIAWLAMLTLWVSILSEYLVNAIEGASDSLN 294
Query: 91 IRDDVAGATFMAAGGSAPELFTSVIGVFVSFDDVGIGTIVGSAVFNILFVIGACAMFS-- 148
+ + G+A E ++++ D+ +G +GS+ +FVI C +
Sbjct: 295 LPVAFISVILLPIVGNAAEHASAIMFAMKDKLDITLGVAIGSSTQISMFVIPFCVVIGWM 354
Query: 149 -RTTLSLTWWPLFRDCTFYSISLLVLIYCFRDNRIYWQEALVLFSLY 194
+ L + LF T + I++LV+ + +D + + L+L Y
Sbjct: 355 MGQKMDLN-FQLFETATLF-ITVLVVAFMLQDGVANYLKGLMLILCY 399
>02_02_0634 +
12441374-12441383,12441991-12442187,12442270-12442485,
12442561-12442677
Length = 179
Score = 32.7 bits (71), Expect = 0.30
Identities = 22/79 (27%), Positives = 39/79 (49%)
Query: 95 VAGATFMAAGGSAPELFTSVIGVFVSFDDVGIGTIVGSAVFNILFVIGACAMFSRTTLSL 154
VAG A G+ PEL ++ + + ++ +++GS + N+L V+G+ +F
Sbjct: 3 VAGGIMNATCGNVPELIIALFALHKNKMEILKWSLLGSILSNLLLVLGSSLLFGGIVNIG 62
Query: 155 TWWPLFRDCTFYSISLLVL 173
PL + SI LL+L
Sbjct: 63 KERPLDKRQADVSIGLLLL 81
>12_02_0458 -
19244972-19245073,19245299-19245673,19245772-19245878,
19245971-19246014,19246110-19246254,19246348-19246486,
19246855-19247091
Length = 382
Score = 30.7 bits (66), Expect = 1.2
Identities = 26/89 (29%), Positives = 36/89 (40%), Gaps = 2/89 (2%)
Query: 17 DPNATQLPNATQLPNATEDAKTPLFPPDVFSEEQRRSGAVLLHVLGMGYMFVALAIVCDE 76
D LPN +L N +D + E+RRS V +G V LA VC
Sbjct: 186 DQGVKLLPNQEELENGEDDDFDTGTAEFIVQVEKRRSIKVFGSSRWLGLGMVLLAGVCFS 245
Query: 77 FFVPALDVII--ERLEIRDDVAGATFMAA 103
F PA+++ + +RD V T A
Sbjct: 246 LFSPAINLATNDQWRTLRDSVPHLTVYTA 274
>11_01_0045 +
346817-347168,347582-347713,347790-347968,348654-348789,
348974-349070,349206-349306,349618-349781,349867-349938,
350034-350150,350235-350369,350421-350532,351197-351513,
353065-353265,353467-353544
Length = 730
Score = 29.9 bits (64), Expect = 2.1
Identities = 17/43 (39%), Positives = 21/43 (48%)
Query: 35 DAKTPLFPPDVFSEEQRRSGAVLLHVLGMGYMFVALAIVCDEF 77
D KTPLF V S A+ + LG+G ALA V E+
Sbjct: 258 DTKTPLFAVGVGSLVNALLDAIFIFPLGLGVSGAALATVTSEY 300
>04_04_1413 - 33386049-33386339
Length = 96
Score = 29.5 bits (63), Expect = 2.8
Identities = 16/35 (45%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
Query: 102 AAGGSAPELFTSVIGVFVSFDDVGIGTIVGSAVFN 136
AAGGS P++ SV+G+ + F V IV VFN
Sbjct: 17 AAGGSVPDVSRSVVGIALVF--VAAVAIVAFVVFN 49
>11_06_0626 -
25620409-25620706,25620814-25620943,25621034-25621250,
25621894-25622015,25622119-25622267,25622642-25622759,
25622840-25623185
Length = 459
Score = 28.7 bits (61), Expect = 4.8
Identities = 16/60 (26%), Positives = 29/60 (48%), Gaps = 5/60 (8%)
Query: 95 VAGATFMAAGGSAPELFTSVIGVF-----VSFDDVGIGTIVGSAVFNILFVIGACAMFSR 149
+A +A G S P++ + I ++ +G GT+VGSA F++ + C + R
Sbjct: 83 IADVALLAFGTSFPQISLATIDAIRNLGQLTAGGLGPGTLVGSAAFDLFPIHAVCVVMPR 142
>02_05_0116 -
25976234-25976394,25976485-25976701,25977345-25977466,
25977570-25977718,25978095-25978212,25978293-25978638
Length = 370
Score = 28.7 bits (61), Expect = 4.8
Identities = 16/60 (26%), Positives = 29/60 (48%), Gaps = 5/60 (8%)
Query: 95 VAGATFMAAGGSAPELFTSVIGVF-----VSFDDVGIGTIVGSAVFNILFVIGACAMFSR 149
+A +A G S P++ + I ++ +G GT+VGSA F++ + C + R
Sbjct: 83 IADVALLAFGTSFPQISLATIDAIRNLGQLTAGGLGPGTLVGSAAFDLFPIHAVCVVMPR 142
>09_02_0577 -
10862976-10863215,10863653-10863788,10863906-10864030,
10864132-10864516,10864571-10864798,10864976-10865319
Length = 485
Score = 28.3 bits (60), Expect = 6.4
Identities = 9/23 (39%), Positives = 19/23 (82%)
Query: 133 AVFNILFVIGACAMFSRTTLSLT 155
A+F ++F++ ACA+FS+T + ++
Sbjct: 372 ALFYVVFMLSACALFSKTWIEVS 394
>09_02_0576 -
10853361-10853600,10854033-10854168,10854285-10854409,
10854487-10854871,10854934-10855161,10855332-10855675
Length = 485
Score = 28.3 bits (60), Expect = 6.4
Identities = 9/23 (39%), Positives = 19/23 (82%)
Query: 133 AVFNILFVIGACAMFSRTTLSLT 155
A+F ++F++ ACA+FS+T + ++
Sbjct: 372 ALFYVVFMLSACALFSKTWIEVS 394
>07_03_0668 +
20530607-20530785,20530897-20530959,20532100-20532187,
20532379-20532415,20532618-20532637,20532725-20532880,
20532990-20533141,20533252-20533411
Length = 284
Score = 28.3 bits (60), Expect = 6.4
Identities = 22/82 (26%), Positives = 38/82 (46%), Gaps = 7/82 (8%)
Query: 63 MGYMFVALAIVCDEFFVPALDVIIERLEIRDDVAGATFMAAGGSAPELFTSVIGVFVSFD 122
+G+ F AI+ + V AL ++ I G F+A +FT +I F+ +
Sbjct: 169 LGWNFGLAAIIYNGVIVTALSYYMQIWTIAK--RGPVFLAMSMPLTLIFTIIISSFILGE 226
Query: 123 DVGIGTIVG-----SAVFNILF 139
V +G+IV +FN+L+
Sbjct: 227 AVSLGSIVAGILLIGGLFNVLW 248
>06_03_1043 - 27097094-27097735
Length = 213
Score = 28.3 bits (60), Expect = 6.4
Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 6/48 (12%)
Query: 212 KKLIYKNKVTR------VRSTDQLMPTVSSPAHPLHAIQLVFGADLIS 253
K L+ N +TR + T +L PTV A P I +V G DL+S
Sbjct: 117 KTLLLANPITRLLAALPISPTPRLSPTVGLAAGPTSIIAVVAGDDLVS 164
>03_02_0140 +
5864612-5864955,5865154-5865381,5865460-5865814,
5865899-5866023,5866150-5866285,5866382-5866621
Length = 475
Score = 28.3 bits (60), Expect = 6.4
Identities = 9/23 (39%), Positives = 19/23 (82%)
Query: 133 AVFNILFVIGACAMFSRTTLSLT 155
A+F ++F++ ACA+FS+T + ++
Sbjct: 362 ALFYVVFMLSACALFSKTWIEVS 384
>06_01_1135 - 9379361-9381018,9381356-9381665,9381811-9382764
Length = 973
Score = 27.9 bits (59), Expect = 8.4
Identities = 15/44 (34%), Positives = 23/44 (52%)
Query: 201 MRWNQPVERAFKKLIYKNKVTRVRSTDQLMPTVSSPAHPLHAIQ 244
+R N P++ + I +N+ TRVR + S+ A L AIQ
Sbjct: 221 LRSNVPLKSTIAEWIMRNEATRVRIARTALSMASTEAMLLEAIQ 264
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.328 0.140 0.432
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,975,914
Number of Sequences: 37544
Number of extensions: 280971
Number of successful extensions: 776
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 756
Number of HSP's gapped (non-prelim): 24
length of query: 254
length of database: 14,793,348
effective HSP length: 80
effective length of query: 174
effective length of database: 11,789,828
effective search space: 2051430072
effective search space used: 2051430072
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.7 bits)
S2: 59 (27.9 bits)
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