GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001977-TA|BGIBMGA001977-PA|IPR004481|K+-dependent
Na+/Ca+ exchanger related-protein, IPR004837|Sodium/calcium exchanger
membrane region
         (254 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   4.7  
AY569717-1|AAS86670.1|  397|Apis mellifera complementary sex det...    21   8.2  
AY569712-1|AAS86665.1|  408|Apis mellifera complementary sex det...    21   8.2  
AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex det...    21   8.2  
AY569703-1|AAS86656.1|  396|Apis mellifera complementary sex det...    21   8.2  
AY569701-1|AAS86654.1|  407|Apis mellifera complementary sex det...    21   8.2  
AY569700-1|AAS86653.1|  407|Apis mellifera complementary sex det...    21   8.2  
AY569699-1|AAS86652.1|  396|Apis mellifera complementary sex det...    21   8.2  
AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex det...    21   8.2  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    21   8.2  

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 12/36 (33%), Positives = 17/36 (47%), Gaps = 1/36 (2%)

Query: 21  TQLPNATQLPNATEDAKTPLFPPDVFS-EEQRRSGA 55
           T     T  PN T++A     PP V   +++  SGA
Sbjct: 669 TTTTTTTTTPNTTQNASATTPPPQVDEVDDKELSGA 704


>AY569717-1|AAS86670.1|  397|Apis mellifera complementary sex
           determiner protein.
          Length = 397

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 8/22 (36%), Positives = 15/22 (68%)

Query: 208 ERAFKKLIYKNKVTRVRSTDQL 229
           ER  KK+I + ++ R+R  ++L
Sbjct: 54  ERLMKKMILEYELRRIREIEKL 75


>AY569712-1|AAS86665.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 8/22 (36%), Positives = 15/22 (68%)

Query: 208 ERAFKKLIYKNKVTRVRSTDQL 229
           ER  KK+I + ++ R+R  ++L
Sbjct: 54  ERLMKKMILEYELRRIREIEKL 75


>AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex
           determiner protein.
          Length = 426

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 8/22 (36%), Positives = 15/22 (68%)

Query: 208 ERAFKKLIYKNKVTRVRSTDQL 229
           ER  KK+I + ++ R+R  ++L
Sbjct: 54  ERLMKKMILEYELRRIREIEKL 75


>AY569703-1|AAS86656.1|  396|Apis mellifera complementary sex
           determiner protein.
          Length = 396

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 8/22 (36%), Positives = 15/22 (68%)

Query: 208 ERAFKKLIYKNKVTRVRSTDQL 229
           ER  KK+I + ++ R+R  ++L
Sbjct: 54  ERLMKKMILEYELRRIREIEKL 75


>AY569701-1|AAS86654.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 8/22 (36%), Positives = 15/22 (68%)

Query: 208 ERAFKKLIYKNKVTRVRSTDQL 229
           ER  KK+I + ++ R+R  ++L
Sbjct: 54  ERLMKKMILEYELRRIREIEKL 75


>AY569700-1|AAS86653.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 8/22 (36%), Positives = 15/22 (68%)

Query: 208 ERAFKKLIYKNKVTRVRSTDQL 229
           ER  KK+I + ++ R+R  ++L
Sbjct: 54  ERLMKKMILEYELRRIREIEKL 75


>AY569699-1|AAS86652.1|  396|Apis mellifera complementary sex
           determiner protein.
          Length = 396

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 8/22 (36%), Positives = 15/22 (68%)

Query: 208 ERAFKKLIYKNKVTRVRSTDQL 229
           ER  KK+I + ++ R+R  ++L
Sbjct: 54  ERLMKKMILEYELRRIREIEKL 75


>AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex
           determiner protein.
          Length = 413

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 8/22 (36%), Positives = 15/22 (68%)

Query: 208 ERAFKKLIYKNKVTRVRSTDQL 229
           ER  KK+I + ++ R+R  ++L
Sbjct: 54  ERLMKKMILEYELRRIREIEKL 75


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 12/50 (24%), Positives = 25/50 (50%), Gaps = 1/50 (2%)

Query: 83  DVIIERLEIRDDVAGATFMAAGGSAPELFTSVIGVFVSFDDVGIGTIVGS 132
           D+++  L  +D V G      G ++P   T  I + +    + +GT++G+
Sbjct: 11  DILLLNLTTQD-VDGFLQGFPGKNSPYTVTQAILIALVLGSIIVGTVIGN 59


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.328    0.140    0.432 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 63,607
Number of Sequences: 429
Number of extensions: 2591
Number of successful extensions: 26
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 18
Number of HSP's gapped (non-prelim): 10
length of query: 254
length of database: 140,377
effective HSP length: 56
effective length of query: 198
effective length of database: 116,353
effective search space: 23037894
effective search space used: 23037894
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.7 bits)
S2: 43 (21.4 bits)