Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001977-TA|BGIBMGA001977-PA|IPR004481|K+-dependent
Na+/Ca+ exchanger related-protein, IPR004837|Sodium/calcium exchanger
membrane region
(254 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g17860.1 68418.m02093 cation exchanger, putative (CAX7) conta... 67 1e-11
At5g17850.1 68418.m02092 cation exchanger, putative (CAX8) simil... 59 2e-09
At3g14070.1 68416.m01777 cation exchanger, putative (CAX9) simil... 59 3e-09
At1g54115.1 68414.m06169 cation exchanger, putative 58 8e-09
At1g08960.1 68414.m00996 cation exchanger, putative (CAX11) simi... 53 2e-07
At2g38170.3 68415.m04686 calcium exchanger (CAX1) identical to h... 38 0.009
At2g38170.1 68415.m04685 calcium exchanger (CAX1) identical to h... 38 0.009
At2g47600.1 68415.m05939 magnesium/proton exchanger (MHX1) ident... 32 0.33
At1g55720.1 68414.m06380 calcium exchanger, putative similar to ... 31 1.00
At5g01490.1 68418.m00063 cation exchanger, putative (CAX4) ident... 30 1.3
At2g34030.1 68415.m04166 calcium-binding EF hand family protein ... 30 1.3
At3g51860.1 68416.m05687 cation exchanger, putative (CAX3) simil... 28 5.3
At2g45850.2 68415.m05703 DNA-binding family protein contains a A... 28 5.3
At2g45850.1 68415.m05702 DNA-binding family protein contains a A... 28 5.3
At2g34250.1 68415.m04190 protein transport protein sec61, putati... 28 7.0
At1g78720.1 68414.m09175 protein transport protein sec61, putati... 28 7.0
At1g29310.1 68414.m03583 protein transport protein sec61, putati... 28 7.0
At5g05740.2 68418.m00632 peptidase M50 family protein / sterol-r... 27 9.3
At5g05740.1 68418.m00631 peptidase M50 family protein / sterol-r... 27 9.3
At2g18750.1 68415.m02183 calmodulin-binding protein similar to c... 27 9.3
At1g15210.1 68414.m01818 ABC transporter family protein Similar ... 27 9.3
>At5g17860.1 68418.m02093 cation exchanger, putative (CAX7) contains
similarity to SWISS-PROT:Q9HC58 NKX3_HUMAN
Sodium/potassium/calcium exchanger 3 precursor {Homo
sapiens}; Ca2+:Cation Antiporter (CaCA) Family member
PMID:11500563
Length = 570
Score = 66.9 bits (156), Expect = 1e-11
Identities = 44/151 (29%), Positives = 77/151 (50%), Gaps = 5/151 (3%)
Query: 56 VLLHVLGMGYMFVALAIVCD---EFFVPALDVIIERLEIRDDVAGATFMAAGGSAPELFT 112
VL H++ ++FV ++ D +F P+LD + + L++ +AG T ++ G AP+LF+
Sbjct: 99 VLGHLVLSAWLFVLFYLLGDTAASYFCPSLDSLSKVLKLSPTMAGVTLLSLGNGAPDLFS 158
Query: 113 SVIGVFVSFD-DVGIGTIVGSAVFNILFVIGA-CAMFSRTTLSLTWWPLFRDCTFYSISL 170
SV+ S + D G+ +I+G A F FV+G C + +++ RD F ++L
Sbjct: 159 SVVSFTRSNNGDFGLNSILGGAFFVSSFVVGTICVLIGSRDVAIDRNSFIRDVVFLLVAL 218
Query: 171 LVLIYCFRDNRIYWQEALVLFSLYGAYVMFM 201
L ++ AL S+Y YV F+
Sbjct: 219 CCLGLIIFIGKVTIWVALCYLSIYLLYVGFL 249
>At5g17850.1 68418.m02092 cation exchanger, putative (CAX8) similar
to sodium/calcium exchanger protein [Mus musculus]
gi|13925661|gb|AAK49407; Ca2+:Cation Antiporter (CaCA)
Family member PMID:11500563
Length = 559
Score = 59.3 bits (137), Expect = 2e-09
Identities = 39/140 (27%), Positives = 66/140 (47%), Gaps = 4/140 (2%)
Query: 66 MFVALAIVCDEFFVPALDVIIERLEIRDDVAGATFMAAGGSAPELFTSVI---GVFVSFD 122
+F L E+F +L+ + + L + VAG T ++ G AP+LF S++ G
Sbjct: 102 LFYLLGHTASEYFCSSLESLSKLLNLSPTVAGVTLLSLGNGAPDLFASLVSFMGESKGTY 161
Query: 123 DVGIGTIVGSAVFNILFVIGACAM-FSRTTLSLTWWPLFRDCTFYSISLLVLIYCFRDNR 181
DVG+ T+VG + F V+G ++ + + + RD F+ ++ L +
Sbjct: 162 DVGLNTVVGGSGFVTCVVVGIISISLHKRRVRIERAAFIRDICFFCAAIGSLALILVYGK 221
Query: 182 IYWQEALVLFSLYGAYVMFM 201
I + AL SLY YV F+
Sbjct: 222 INFWGALGFCSLYAVYVAFV 241
>At3g14070.1 68416.m01777 cation exchanger, putative (CAX9) similar
to sodium/calcium exchanger protein [Mus musculus]
gi|13925661|gb|AAK49407; Ca2+:Cation Antiporter (CaCA)
Family member PMID:11500563
Length = 643
Score = 58.8 bits (136), Expect = 3e-09
Identities = 39/151 (25%), Positives = 73/151 (48%), Gaps = 4/151 (2%)
Query: 66 MFVALAIVCDEFFVPALDVIIERLEIRDDVAGATFMAAGGSAPELFTSVIGVFVSFD--D 123
+F L ++F +L+ + + L + VAG T + G AP++F S I FV D +
Sbjct: 148 LFYLLGNTAADYFCCSLEKLSKLLRLPPTVAGVTLLPLGNGAPDVFAS-IAAFVGTDKGE 206
Query: 124 VGIGTIVGSAVFNILFVIGACAM-FSRTTLSLTWWPLFRDCTFYSISLLVLIYCFRDNRI 182
VG+ +++G AVF V+G ++ + + + RD +F+ SL+ L+ R+
Sbjct: 207 VGLNSVLGGAVFVTSVVVGIVSLCVADKEVKIDKNCFIRDLSFFLFSLVSLLVILMVGRV 266
Query: 183 YWQEALVLFSLYGAYVMFMRWNQPVERAFKK 213
+ A+ S+Y Y + N + + K+
Sbjct: 267 TVRIAIAFVSIYVVYAFLVAANVILRKHAKR 297
>At1g54115.1 68414.m06169 cation exchanger, putative
Length = 644
Score = 57.6 bits (133), Expect = 8e-09
Identities = 41/164 (25%), Positives = 80/164 (48%), Gaps = 5/164 (3%)
Query: 54 GAVLLHVLGMGYMFVALAIVCDEFFVPALDVIIERLEIRDDVAGATFMAAGGSAPELFTS 113
G +LL V + +F L ++F +L+ + + L + VAG T + G AP++F S
Sbjct: 136 GYILLGVWLVA-LFYLLGNTAADYFCCSLEKLSKLLRLPPTVAGVTLLPLGNGAPDVFAS 194
Query: 114 VIGVFVSFD--DVGIGTIVGSAVFNILFVIGACAM-FSRTTLSLTWWPLFRDCTFYSISL 170
I FV D +VG+ +++G AVF V+G ++ + + + RD +F+ +L
Sbjct: 195 -IAAFVGSDKGEVGLNSVLGGAVFVTCVVVGIVSLCVADKEVKIDKKCFIRDLSFFLFTL 253
Query: 171 LVLIYCFRDNRIYWQEALVLFSLYGAYVMFMRWNQPVERAFKKL 214
+ L+ ++ A+ S+Y Y + N+ + + ++L
Sbjct: 254 VALMVILMVGKVTVGIAIAFVSIYVFYASLVAANEILRKHSRRL 297
>At1g08960.1 68414.m00996 cation exchanger, putative (CAX11) similar
to sodium/calcium exchanger protein [Mus musculus]
gi|13925661|gb|AAK49407; Ca2+:Cation Antiporter (CaCA)
Family member PMID:11500563
Length = 415
Score = 52.8 bits (121), Expect = 2e-07
Identities = 31/109 (28%), Positives = 50/109 (45%), Gaps = 1/109 (0%)
Query: 95 VAGATFMAAGGSAPELFTSVIGVFVSFDDVGIGTIVGSAVFNILFVIGACAMFSRTTLSL 154
+A T +A G AP++F SV + G G I+ + F FV+G A+++ +
Sbjct: 1 MAAVTLLALGNGAPDVFASVAALRGGQYRTGFGAILSAGTFVSAFVVGFVAIYA-APFPV 59
Query: 155 TWWPLFRDCTFYSISLLVLIYCFRDNRIYWQEALVLFSLYGAYVMFMRW 203
RD FY I+ L L Y + I+ +A+ Y +V F+ W
Sbjct: 60 DAASFVRDVLFYLIAALFLFYVYLSGEIFVWQAIGFVGFYIFFVGFVFW 108
>At2g38170.3 68415.m04686 calcium exchanger (CAX1) identical to high
affinity calcium antiporter CAX1 [Arabidopsis thaliana]
gi|9256741|gb|AAB05913, except a possible frameshift at
base 58008. Sequence has been confirmed with 5
sequencing reads.; Ca2+:Cation Antiporter (CaCA) Family
member PMID:11500563
Length = 475
Score = 37.5 bits (83), Expect = 0.009
Identities = 31/156 (19%), Positives = 66/156 (42%), Gaps = 7/156 (4%)
Query: 44 DVFSEEQRRSGAVLLHVLGMGYMFVALAIVC--DEFFVPALDVIIERLEIRDDVAGATFM 101
D + ++ + AV+ G ++ ++ E+ V ++ ++ + +
Sbjct: 270 DEYDDDVEQETAVISFWSGFAWLVGMTLVIALLSEYVVATIEEASDKWNLSVSFISIILL 329
Query: 102 AAGGSAPELFTSVIGVFVSFDDVGIGTIVGSAVFNILFVIG---ACAMFSRTTLSLTWWP 158
G+A E +VI F + D+ +G +GSA LFV+ A + L + P
Sbjct: 330 PIVGNAAEHAGAVIFAFKNKLDISLGVALGSATQIGLFVVPLTIIVAWILGINMDLNFGP 389
Query: 159 LFRDCTFYSISLLVLIYCFRDNRIYWQEALVLFSLY 194
L C ++S+++ + +D ++ + LVL Y
Sbjct: 390 LETGC--LAVSIIITAFTLQDGSSHYMKGLVLLLCY 423
>At2g38170.1 68415.m04685 calcium exchanger (CAX1) identical to high
affinity calcium antiporter CAX1 [Arabidopsis thaliana]
gi|9256741|gb|AAB05913, except a possible frameshift at
base 58008. Sequence has been confirmed with 5
sequencing reads.; Ca2+:Cation Antiporter (CaCA) Family
member PMID:11500563
Length = 463
Score = 37.5 bits (83), Expect = 0.009
Identities = 31/156 (19%), Positives = 66/156 (42%), Gaps = 7/156 (4%)
Query: 44 DVFSEEQRRSGAVLLHVLGMGYMFVALAIVC--DEFFVPALDVIIERLEIRDDVAGATFM 101
D + ++ + AV+ G ++ ++ E+ V ++ ++ + +
Sbjct: 270 DEYDDDVEQETAVISFWSGFAWLVGMTLVIALLSEYVVATIEEASDKWNLSVSFISIILL 329
Query: 102 AAGGSAPELFTSVIGVFVSFDDVGIGTIVGSAVFNILFVIG---ACAMFSRTTLSLTWWP 158
G+A E +VI F + D+ +G +GSA LFV+ A + L + P
Sbjct: 330 PIVGNAAEHAGAVIFAFKNKLDISLGVALGSATQIGLFVVPLTIIVAWILGINMDLNFGP 389
Query: 159 LFRDCTFYSISLLVLIYCFRDNRIYWQEALVLFSLY 194
L C ++S+++ + +D ++ + LVL Y
Sbjct: 390 LETGC--LAVSIIITAFTLQDGSSHYMKGLVLLLCY 423
>At2g47600.1 68415.m05939 magnesium/proton exchanger (MHX1)
identical to magnesium/proton exchanger AtMHX
[Arabidopsis thaliana] gi|6492237|gb|AAF14229;
Ca2+:Cation Antiporter (CaCA) Family member
PMID:11500563
Length = 539
Score = 32.3 bits (70), Expect = 0.33
Identities = 42/181 (23%), Positives = 76/181 (41%), Gaps = 34/181 (18%)
Query: 57 LLHVLGMGYMFVALAIVCDEFFVPALDVI-----------IERLEI-------RDDVAGA 98
+L+ LG+ Y F+ L+ + FF +V+ I + E+ +A
Sbjct: 42 VLYFLGLAYCFIGLSAITARFFKSMENVVKHSRKVVTIDPITKAEVITYKKVWNFTIADI 101
Query: 99 TFMAAGGSAPELFTSVIGVFVSFDD-----VGIGTIVGSAVFNILFVIGACAMFSRT--- 150
+ +A G S P++ + I + + +G GT+VGSA F++ + C + +
Sbjct: 102 SLLAFGTSFPQISLATIDAIRNMGERYAGGLGPGTLVGSAAFDLFPIHAVCVVVPKAGEL 161
Query: 151 --TLSLTWWPLFRDCTFYS-ISLLVLIYCFRDNRIYWQEALVLFSLYG-----AYVMFMR 202
L W + +F++ I L +++ + N I EAL+ YG AY R
Sbjct: 162 KKISDLGVWLVELVWSFWAYIWLYIILEVWSPNVITLVEALLTVLQYGLLLVHAYAQDKR 221
Query: 203 W 203
W
Sbjct: 222 W 222
>At1g55720.1 68414.m06380 calcium exchanger, putative similar to low
affinity calcium antiporter CAX2 [Arabidopsis thaliana]
gi|1488267|gb|AAB05914; H+/Ca2+ exchanger 2 [Ipomoea
nil] gi|4512263|dbj|BAA75232; Ca2+:Cation Antiporter
(CaCA) Family member PMID:11500563
Length = 401
Score = 30.7 bits (66), Expect = 1.00
Identities = 30/96 (31%), Positives = 44/96 (45%), Gaps = 5/96 (5%)
Query: 55 AVLLHVL--GMGYMFVALAIVCDEFFVPALDVIIERLEIRDDVA-GATFMAAGGSAPELF 111
A+L+H L G+ F+ L++V L E+L G A G+ EL
Sbjct: 41 AILVHYLTDNKGWFFL-LSLVGITPLAERLGYATEQLSCYTGATVGGLLNATFGNVIELI 99
Query: 112 TSVIGVFVSFDDVGIGTIVGSAVFNILFVIGACAMF 147
S+I + V T++GS + NIL V+G CA F
Sbjct: 100 ISIIALKNGMIRVVQLTLLGSILSNILLVLG-CAFF 134
>At5g01490.1 68418.m00063 cation exchanger, putative (CAX4)
identical to cation/proton antiporter [Arabidopsis
thaliana] gi|15426028|gb|AAK97656; similar to high
affinity calcium antiporter CAX1 [Arabidopsis thaliana]
gi|9256741|gb|AAB05913; Ca2+:Cation Antiporter (CaCA)
Family member PMID:11500563
Length = 454
Score = 30.3 bits (65), Expect = 1.3
Identities = 27/101 (26%), Positives = 46/101 (45%), Gaps = 5/101 (4%)
Query: 97 GATFMAAGGSAPELFTSVIGVFVSFDDVGIGTIVGSAVFNILFVIGACAMFSRT---TLS 153
G + G+A E +VI F + D+ +G +GSA LFV+ + + T +
Sbjct: 329 GIILLPIVGNAAEHAGAVIFAFRNKLDITLGIALGSATQIALFVVPVTVLVAWTMGIEMD 388
Query: 154 LTWWPLFRDCTFYSISLLVLIYCFRDNRIYWQEALVLFSLY 194
L + L C +++S+LV +D + + LVL Y
Sbjct: 389 LNFNLLETAC--FALSILVTSLVLQDGTSNYMKGLVLLLCY 427
>At2g34030.1 68415.m04166 calcium-binding EF hand family protein
contains INTERPRO:IPR002048 calcium-binding EF-hand
domain
Length = 566
Score = 30.3 bits (65), Expect = 1.3
Identities = 14/31 (45%), Positives = 18/31 (58%)
Query: 120 SFDDVGIGTIVGSAVFNILFVIGACAMFSRT 150
SF D +G VG VF++ GAC +FS T
Sbjct: 144 SFIDDNVGLTVGHTVFSLTIQWGACVVFSIT 174
>At3g51860.1 68416.m05687 cation exchanger, putative (CAX3) similar
to high affinity calcium antiporter CAX1 [Arabidopsis
thaliana] gi|9256741|gb|AAB05913; Ca2+:Cation Antiporter
(CaCA) Family member PMID:11500563; non-consensus
AT-acceptor splice site at intron 1
Length = 459
Score = 28.3 bits (60), Expect = 5.3
Identities = 24/92 (26%), Positives = 43/92 (46%), Gaps = 3/92 (3%)
Query: 105 GSAPELFTSVIGVFVSFDDVGIGTIVGSAVFNILFVIGACAMFSRTTLSLTWWPLFRDCT 164
G+A E ++I F + D+ +G +GSA LFV+ ++ L + F
Sbjct: 335 GNAAEHAGAIIFAFKNKLDISLGVALGSATQISLFVV-PLSVIVAWILGIKMDLNFNILE 393
Query: 165 FYSISLLVLIYCF--RDNRIYWQEALVLFSLY 194
S++L ++I F +D ++ + LVL Y
Sbjct: 394 TSSLALAIIITAFTLQDGTSHYMKGLVLLLCY 425
>At2g45850.2 68415.m05703 DNA-binding family protein contains a AT
hook motif (DNA binding motifs with a preference for A/T
rich regions), Pfam:PF02178
Length = 348
Score = 28.3 bits (60), Expect = 5.3
Identities = 20/73 (27%), Positives = 32/73 (43%)
Query: 181 RIYWQEALVLFSLYGAYVMFMRWNQPVERAFKKLIYKNKVTRVRSTDQLMPTVSSPAHPL 240
R Y Q+ V +L + V + N +R + K R+ S +LMP+ S +
Sbjct: 105 RKYGQDGSVSLALSSSSVSTITPNNSNKRGRGRPPGSGKKQRMASVGELMPSSSGMSFTP 164
Query: 241 HAIQLVFGADLIS 253
H I + G D+ S
Sbjct: 165 HVIAVSIGEDIAS 177
>At2g45850.1 68415.m05702 DNA-binding family protein contains a AT
hook motif (DNA binding motifs with a preference for A/T
rich regions), Pfam:PF02178
Length = 348
Score = 28.3 bits (60), Expect = 5.3
Identities = 20/73 (27%), Positives = 32/73 (43%)
Query: 181 RIYWQEALVLFSLYGAYVMFMRWNQPVERAFKKLIYKNKVTRVRSTDQLMPTVSSPAHPL 240
R Y Q+ V +L + V + N +R + K R+ S +LMP+ S +
Sbjct: 105 RKYGQDGSVSLALSSSSVSTITPNNSNKRGRGRPPGSGKKQRMASVGELMPSSSGMSFTP 164
Query: 241 HAIQLVFGADLIS 253
H I + G D+ S
Sbjct: 165 HVIAVSIGEDIAS 177
>At2g34250.1 68415.m04190 protein transport protein sec61, putative
similar to PfSec61 [Plasmodium falciparum] GI:3057044;
contains Pfam profile PF00344: eubacterial secY protein
Length = 475
Score = 27.9 bits (59), Expect = 7.0
Identities = 10/23 (43%), Positives = 19/23 (82%)
Query: 133 AVFNILFVIGACAMFSRTTLSLT 155
A+F I+F++ ACA+FS+T + ++
Sbjct: 362 ALFYIVFMLTACALFSKTWIEVS 384
>At1g78720.1 68414.m09175 protein transport protein sec61, putative
similar to SP|P38377 Protein transport protein Sec61
alpha subunit isoform 1 (Sec61 alpha- 1) {Canis
familiaris}; contains Pfam profile PF00344: eubacterial
secY protein
Length = 475
Score = 27.9 bits (59), Expect = 7.0
Identities = 9/23 (39%), Positives = 19/23 (82%)
Query: 133 AVFNILFVIGACAMFSRTTLSLT 155
A+F ++F++ ACA+FS+T + ++
Sbjct: 362 ALFYLVFMLAACALFSKTWIEVS 384
>At1g29310.1 68414.m03583 protein transport protein sec61, putative
similar to PfSec61 [Plasmodium falciparum] GI:3057044;
contains Pfam profile PF00344: eubacterial secY protein
Length = 475
Score = 27.9 bits (59), Expect = 7.0
Identities = 10/23 (43%), Positives = 19/23 (82%)
Query: 133 AVFNILFVIGACAMFSRTTLSLT 155
A+F I+F++ ACA+FS+T + ++
Sbjct: 362 ALFYIVFMLTACALFSKTWIEVS 384
>At5g05740.2 68418.m00632 peptidase M50 family protein /
sterol-regulatory element binding protein (SREBP) site 2
protease family protein contains Pfam PF02163:
Sterol-regulatory element binding protein (SREBP) site 2
protease
Length = 527
Score = 27.5 bits (58), Expect = 9.3
Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Query: 110 LFTSVIGVFVSFDDVGIGTIVGSAVFNILFVIGACA 145
L +IG+FV D GIG +V ++VF+ F+ G A
Sbjct: 356 LILFLIGLFVPPSD-GIGVVVDASVFHESFLAGGIA 390
>At5g05740.1 68418.m00631 peptidase M50 family protein /
sterol-regulatory element binding protein (SREBP) site 2
protease family protein contains Pfam PF02163:
Sterol-regulatory element binding protein (SREBP) site 2
protease
Length = 556
Score = 27.5 bits (58), Expect = 9.3
Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Query: 110 LFTSVIGVFVSFDDVGIGTIVGSAVFNILFVIGACA 145
L +IG+FV D GIG +V ++VF+ F+ G A
Sbjct: 385 LILFLIGLFVPPSD-GIGVVVDASVFHESFLAGGIA 419
>At2g18750.1 68415.m02183 calmodulin-binding protein similar to
calmodulin-binding protein TCB60 GI:1698548 from
[Nicotiana tabacum]
Length = 622
Score = 27.5 bits (58), Expect = 9.3
Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Query: 200 FMRWNQPVERAFKKLIYKNKVTRVRSTDQLMPTVSSPAHP 239
+ W Q +E K L+ N+V++ D MP VS P+ P
Sbjct: 379 YENWEQVIEYDSKSLMNFNQVSKTDDIDYSMP-VSVPSQP 417
>At1g15210.1 68414.m01818 ABC transporter family protein Similar to
gb|Z70524 GI:1514643 PDR5-like ABC transporter from
Spirodela polyrrhiza and is a member of the PF|00005 ABC
transporter family. ESTs gb|N97039 and gb|T43169 come
from this gene
Length = 1442
Score = 27.5 bits (58), Expect = 9.3
Identities = 15/45 (33%), Positives = 26/45 (57%), Gaps = 6/45 (13%)
Query: 103 AGGSAPELFTSVIGVFVSFDD-----VGIGTIVG-SAVFNILFVI 141
+G S L TSV+ ++ FDD +G+G ++G + +FN F +
Sbjct: 743 SGNSTTRLGTSVLNIWDVFDDKNWYWIGVGGLLGFTVIFNGFFTL 787
Database: arabidopsis
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.328 0.140 0.432
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,495,092
Number of Sequences: 28952
Number of extensions: 219151
Number of successful extensions: 611
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 589
Number of HSP's gapped (non-prelim): 25
length of query: 254
length of database: 12,070,560
effective HSP length: 79
effective length of query: 175
effective length of database: 9,783,352
effective search space: 1712086600
effective search space used: 1712086600
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.7 bits)
S2: 58 (27.5 bits)
- SilkBase 1999-2023 -