GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001976-TA|BGIBMGA001976-PA|IPR002931|Transglutaminase-
like, IPR008958|Transglutaminase-like, C-terminal,
IPR013807|Transglutaminase, C-terminal
         (626 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC14C4.09 |agn1||glucan endo-1,3-alpha-glucosidase Agn1|Schizo...    29   1.9  
SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces...    27   5.9  
SPBC119.15 |||AAA family ATPase, unknown biological role|Schizos...    27   5.9  
SPAC22E12.01 ||SPAC890.09|triose phosphate transporter |Schizosa...    27   7.8  
SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium tra...    27   7.8  

>SPAC14C4.09 |agn1||glucan endo-1,3-alpha-glucosidase
           Agn1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 424

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 13/49 (26%), Positives = 25/49 (51%), Gaps = 5/49 (10%)

Query: 69  DIYILFNPWNPDDQTYMEDCTLLQEYVLNDVGKVWVGPIKTTRGKPWFY 117
           D ++ +N W   D    ++  +  + + N +GK++V P+      PWFY
Sbjct: 178 DGFLSWNAWPTTDADMNDNDDIGYQNLANSLGKLYVAPV-----SPWFY 221


>SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1639

 Score = 27.5 bits (58), Expect = 5.9
 Identities = 28/95 (29%), Positives = 42/95 (44%), Gaps = 4/95 (4%)

Query: 344  DTNNYHIGRMVLTKKPFVFDPIGDEDRED---ITSQYKYKEGTASERLALMNGVRYSERA 400
            D N+  I  ++   KP  F P+   D E+   I +        A E+ A    +RY+  A
Sbjct: 1444 DCNSESIHYVLKLVKPSKFFPLFYSDSEEKGKIGALNDMTRKAAMEQKADAETLRYN-LA 1502

Query: 401  KRYYSVVSNLQTDVTFKLRDIDLVSIGKDFKVTID 435
            K  +SV+      +  K+    L  IG  FKVT+D
Sbjct: 1503 KSGFSVLLAEDNIINIKVISRYLERIGVKFKVTMD 1537


>SPBC119.15 |||AAA family ATPase, unknown biological
           role|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 367

 Score = 27.5 bits (58), Expect = 5.9
 Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 4/59 (6%)

Query: 328 MRWRKDPEAETGFSMVDTNNYHIGRMVLTKKPFVFDPIGDEDREDITSQYKYKEGTASE 386
           M   KD E + G ++ D  + + G +V    P   D +  EDRED+  QY+   G + +
Sbjct: 297 MHVSKDKE-DVGLTVSDAEDEYNGELV---DPDEDDGLTAEDREDMIKQYRVALGISDD 351


>SPAC22E12.01 ||SPAC890.09|triose phosphate transporter
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 374

 Score = 27.1 bits (57), Expect = 7.8
 Identities = 23/91 (25%), Positives = 42/91 (46%), Gaps = 6/91 (6%)

Query: 72  ILFNPWNPDDQTYMEDCTLLQEYVLNDVGKVWVGPIKTTRGKPW-FYGQFDAVVL--PAC 128
           +L +PW  +  T +   T L    L   G ++ GP++      W  +G F +VV+  P  
Sbjct: 227 LLDHPWTSNPFTSLFALTPLMFLFLLVAGLIFEGPVRFIESPAWKEFGPFMSVVILVPGT 286

Query: 129 M-FMLDKAEFPFNQRGDPV--KVARVISKIV 156
           + F +  +EF   Q+   V   V  ++ +I+
Sbjct: 287 LAFFMVASEFGLIQKTSIVTLSVCGILKEII 317


>SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium
            transporting Cta4 |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1211

 Score = 27.1 bits (57), Expect = 7.8
 Identities = 18/82 (21%), Positives = 38/82 (46%)

Query: 439  VSDQGRNIKASLSASSFYYNGVKFDIIKKIEGKLYVGPQKNEEVSLVVKVEDYLPKLVEY 498
            ++ QGR  + +LS +   Y G+       I G     P+ N ++ LV    ++  +L+  
Sbjct: 1121 INYQGRPFREALSENKGMYYGLLGIAFVAIAGVTEFSPELNAKLQLVKMAYNFQIQLLAT 1180

Query: 499  GNIKISAMAIVDETKQSWADDD 520
              +  +A  I++E  + +  D+
Sbjct: 1181 MVVDYAACWIIEELMKKYFRDN 1202


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.317    0.134    0.403 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,881,845
Number of Sequences: 5004
Number of extensions: 124152
Number of successful extensions: 316
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 315
Number of HSP's gapped (non-prelim): 5
length of query: 626
length of database: 2,362,478
effective HSP length: 77
effective length of query: 549
effective length of database: 1,977,170
effective search space: 1085466330
effective search space used: 1085466330
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 57 (27.1 bits)