GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001976-TA|BGIBMGA001976-PA|IPR002931|Transglutaminase-
like, IPR008958|Transglutaminase-like, C-terminal,
IPR013807|Transglutaminase, C-terminal
         (626 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_02_0287 - 8598298-8598313,8598566-8598618,8598964-8599073,859...    30   4.8  
02_01_0354 + 2551675-2551874,2552721-2552833,2552982-2553170,255...    30   4.8  
10_08_0748 - 20277623-20277736,20277956-20279425                       29   8.4  
09_06_0201 - 21545189-21545494,21545593-21545743,21545835-215460...    29   8.4  
09_06_0198 - 21496692-21496991,21497111-21497258,21497341-214975...    29   8.4  

>02_02_0287 -
           8598298-8598313,8598566-8598618,8598964-8599073,
           8599179-8599264,8599664-8599785,8600063-8600180,
           8600304-8600785
          Length = 328

 Score = 30.3 bits (65), Expect = 4.8
 Identities = 29/122 (23%), Positives = 55/122 (45%), Gaps = 12/122 (9%)

Query: 152 ISKIVNSNDDDGVLAGRWDGQY----DDGTAPSEWTGSVEILAQFLETQQTVPYGQC--- 204
           +++++ +ND D +L G     +     +   P     SVE+ A   E Q T P G     
Sbjct: 174 VTELLLTNDGDHILEGSITNFFVVCRREEEHPLNKPLSVEMTANEFEVQ-TAPLGDGILP 232

Query: 205 WVFAGVVTAVCRALGIPSRVVSNLVSAHDANSTLTVDKYYSENMEEMESVDSIWNYHVWN 264
            +   +V  VC  +GIP R VS   S H     L  + + + ++  ++ V+++    +W 
Sbjct: 233 GIMRQIVIEVCHDIGIPFREVSPSWSKH----KLWEEAFVTSSLRLIQHVETVQAPILWE 288

Query: 265 DV 266
           ++
Sbjct: 289 NI 290


>02_01_0354 +
           2551675-2551874,2552721-2552833,2552982-2553170,
           2553667-2553737,2553835-2553909,2553983-2554209,
           2554361-2554550,2554627-2554692,2554807-2554895,
           2554990-2555104,2555190-2555241,2555317-2555417,
           2555516-2555629
          Length = 533

 Score = 30.3 bits (65), Expect = 4.8
 Identities = 19/80 (23%), Positives = 37/80 (46%), Gaps = 2/80 (2%)

Query: 300 APLEAIKQGVIGLSYDVDFMLASVNADLMRWRKDPEAETGFSMVDTN--NYHIGRMVLTK 357
           APL  +    + +   VD   ++ ++ L R+R  P A +G  +  T   +  + R++   
Sbjct: 34  APLAVLAAAALAVELAVDGSASASSSPLRRFRTRPGASSGILLGATTLPSVMLSRLIQLY 93

Query: 358 KPFVFDPIGDEDREDITSQY 377
           +  + DP G E+   +  QY
Sbjct: 94  RVLLADPNGREEYAYLEMQY 113


>10_08_0748 - 20277623-20277736,20277956-20279425
          Length = 527

 Score = 29.5 bits (63), Expect = 8.4
 Identities = 20/62 (32%), Positives = 28/62 (45%), Gaps = 1/62 (1%)

Query: 116 FYGQFDAVVLPACMFMLDKAEFPFNQRGDPVKVARVISKIVNSNDDDGVLAGRWDGQYDD 175
           FY +     LP  M   D ++FP+   G   + A  IS+IV+     G+   RW    DD
Sbjct: 150 FYSKSSRTGLPPIMVSSDTSKFPYT-HGAGSRSALRISRIVSETFRLGLPGVRWFVMGDD 208

Query: 176 GT 177
            T
Sbjct: 209 DT 210


>09_06_0201 -
           21545189-21545494,21545593-21545743,21545835-21546072,
           21546158-21546365,21546446-21546639,21546721-21546819,
           21546886-21546922,21548242-21548775
          Length = 588

 Score = 29.5 bits (63), Expect = 8.4
 Identities = 15/55 (27%), Positives = 26/55 (47%)

Query: 45  GTWSLRVVTRQKNSSAREIYDFDQDIYILFNPWNPDDQTYMEDCTLLQEYVLNDV 99
           G   L V+T  + SS   I DF   I   +N W  +    + D +++   +L++V
Sbjct: 460 GVLLLEVITGIRRSSTSNIMDFPNLIIYAWNMWKEEKTKDLADSSIIGSCLLDEV 514


>09_06_0198 - 21496692-21496991,21497111-21497258,21497341-21497578,
            21497679-21497889,21497977-21498170,21498263-21498364,
            21498525-21499879,21501193-21501494,21501600-21501750,
            21501838-21502102,21502155-21502362,21502467-21502660,
            21502749-21502850,21503481-21503680,21504010-21504846,
            21505806-21506107,21506209-21506359,21506447-21506684,
            21506764-21506971,21507078-21507271,21507322-21507462,
            21513484-21514811,21515923-21516227,21516331-21516481,
            21516570-21516807,21516881-21517088,21517197-21517366,
            21517451-21517549,21517708-21519029,21521601-21521683
          Length = 3314

 Score = 29.5 bits (63), Expect = 8.4
 Identities = 16/55 (29%), Positives = 25/55 (45%)

Query: 45   GTWSLRVVTRQKNSSAREIYDFDQDIYILFNPWNPDDQTYMEDCTLLQEYVLNDV 99
            G   L VVT  + SS   I DF   I   +N W       + D +++   +L++V
Sbjct: 2338 GVLLLEVVTGIRRSSTSNIMDFPNLIVYSWNMWKEGKMKDLADSSIMDSCLLHEV 2392


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.317    0.134    0.403 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,863,957
Number of Sequences: 37544
Number of extensions: 758511
Number of successful extensions: 1731
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1727
Number of HSP's gapped (non-prelim): 7
length of query: 626
length of database: 14,793,348
effective HSP length: 86
effective length of query: 540
effective length of database: 11,564,564
effective search space: 6244864560
effective search space used: 6244864560
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 63 (29.5 bits)