GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001976-TA|BGIBMGA001976-PA|IPR002931|Transglutaminase-
like, IPR008958|Transglutaminase-like, C-terminal,
IPR013807|Transglutaminase, C-terminal
         (626 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024756-4|AAX88819.1|  639|Caenorhabditis elegans Hypothetical ...    34   0.35 
U00031-4|AAK18867.1|  378|Caenorhabditis elegans Hypothetical pr...    33   0.60 
AF003145-3|AAB57717.1|  751|Caenorhabditis elegans Cpeb polya bi...    32   1.1  
U41264-6|AAA82426.1|  437|Caenorhabditis elegans Hypothetical pr...    32   1.4  
AF016684-9|AAB66212.2|  348|Caenorhabditis elegans Hypothetical ...    31   2.4  
U39850-10|AAA81060.2|  439|Caenorhabditis elegans Hypothetical p...    31   3.2  
Z93387-4|CAI91177.1|  333|Caenorhabditis elegans Hypothetical pr...    30   5.6  
Z93387-3|CAB07652.1|  352|Caenorhabditis elegans Hypothetical pr...    30   5.6  
Z83119-5|CAB05582.3| 1364|Caenorhabditis elegans Hypothetical pr...    29   9.8  

>AC024756-4|AAX88819.1|  639|Caenorhabditis elegans Hypothetical
           protein Y34D9A.3 protein.
          Length = 639

 Score = 33.9 bits (74), Expect = 0.35
 Identities = 26/109 (23%), Positives = 52/109 (47%), Gaps = 3/109 (2%)

Query: 435 DIKNVSDQGRNIKASLSASSFYYNGV-KFD--IIKKIEGKLYVGPQKNEEVSLVVKVEDY 491
           D + + +  +N++A +++  F+ N + KFD   I  IE +L +   + +   L ++++  
Sbjct: 324 DFQFLLETAKNLQAPVNSDGFWRNSLEKFDENSIIFIENQLKIMATRIDRKGLALRIQQI 383

Query: 492 LPKLVEYGNIKISAMAIVDETKQSWADDDDFQILKPNINIKFKDDLIIG 540
             K+++         AI  +  Q   +  DF IL PN +      LI+G
Sbjct: 384 SQKMMQKSGKIEEKTAIFIKFPQILLEIADFSILPPNSSNLLFSTLILG 432


>U00031-4|AAK18867.1|  378|Caenorhabditis elegans Hypothetical
           protein B0361.6 protein.
          Length = 378

 Score = 33.1 bits (72), Expect = 0.60
 Identities = 22/83 (26%), Positives = 42/83 (50%), Gaps = 5/83 (6%)

Query: 372 DITSQYKYKEGTASERLALMNGVRYSERAKRYYSVVSNLQTDVTFKLRDIDLVSIGKDFK 431
           D     KY E T    L    GV   +R+K     + N+  +  F++ D D V +    +
Sbjct: 178 DAQHHLKYDEKT----LRFREGVVLKKRSKDGRGPICNIGLEKEFEI-DSDAVQLPPYTR 232

Query: 432 VTIDIKNVSDQGRNIKASLSASS 454
           VT++IKN+++Q +  + S+++ +
Sbjct: 233 VTVEIKNLTEQCKLYRGSITSGA 255


>AF003145-3|AAB57717.1|  751|Caenorhabditis elegans Cpeb polya
           binding family protein 3 protein.
          Length = 751

 Score = 32.3 bits (70), Expect = 1.1
 Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 2/48 (4%)

Query: 45  GTWSLRVVTRQKNSSAREIYDFDQDIYILFNPWNPDDQTYMEDCTLLQ 92
           G W  ++  R + S + EI    Q  Y+   PW   D  + ED TLL+
Sbjct: 386 GEWYFKI--RAQRSKSTEIRQVGQPQYVQIIPWVTSDSMFCEDDTLLE 431


>U41264-6|AAA82426.1|  437|Caenorhabditis elegans Hypothetical
           protein F10E7.10 protein.
          Length = 437

 Score = 31.9 bits (69), Expect = 1.4
 Identities = 29/112 (25%), Positives = 47/112 (41%), Gaps = 12/112 (10%)

Query: 53  TRQKNSSAREIYDFDQDIYILFNPWNPDDQTYMEDCTLLQEYVLNDVGKVWVGPIKTTRG 112
           T Q N S R +  F Q ++ LF      D++Y   C     +V+ D+       +  +  
Sbjct: 85  TEQPNGSIRRLCIFVQ-LHPLFV--TESDRSYCAQCVYADSHVMKDIEST----LDISEA 137

Query: 113 KPWFYG-QFDAVVLPACMFMLDKAEFPFNQRGDPVKVARVISKIVNSNDDDG 163
            P     QFDA V+P C + + K      + G PV+ A +   + +    DG
Sbjct: 138 PPLQLSPQFDAPVMPKCNYSIRKQ----GKDGPPVQYASIGDSVFHVWSCDG 185


>AF016684-9|AAB66212.2|  348|Caenorhabditis elegans Hypothetical
           protein F45C12.14 protein.
          Length = 348

 Score = 31.1 bits (67), Expect = 2.4
 Identities = 13/58 (22%), Positives = 27/58 (46%)

Query: 226 SNLVSAHDANSTLTVDKYYSENMEEMESVDSIWNYHVWNDVWMARPDLPTGYGGWQAI 283
           SN ++ H  N       ++S  +E  E+V  +++     +V   +  LP  +G W+ +
Sbjct: 60  SNRIALHFGNDIADFQDFHSSQLEPTETVSVVFSTEQLYNVASGKWKLPVSFGSWKIL 117


>U39850-10|AAA81060.2|  439|Caenorhabditis elegans Hypothetical
           protein F52C9.3 protein.
          Length = 439

 Score = 30.7 bits (66), Expect = 3.2
 Identities = 14/32 (43%), Positives = 17/32 (53%)

Query: 86  EDCTLLQEYVLNDVGKVWVGPIKTTRGKPWFY 117
           E  TL  EY L DV   W   I+ TR K W++
Sbjct: 207 EGSTLAPEYGLGDVSAGWFRQIEDTRKKFWYF 238


>Z93387-4|CAI91177.1|  333|Caenorhabditis elegans Hypothetical
           protein T02E9.2b protein.
          Length = 333

 Score = 29.9 bits (64), Expect = 5.6
 Identities = 18/41 (43%), Positives = 21/41 (51%), Gaps = 4/41 (9%)

Query: 267 WMARPDLPT--GYGG-WQAIDATPQETS-QGQYQCGPAPLE 303
           + A P  P   GYGG  Q   A P     QG YQ GPAP++
Sbjct: 62  YAAAPQYPQQGGYGGAQQGFQAAPAPYQPQGGYQAGPAPVQ 102


>Z93387-3|CAB07652.1|  352|Caenorhabditis elegans Hypothetical
           protein T02E9.2a protein.
          Length = 352

 Score = 29.9 bits (64), Expect = 5.6
 Identities = 18/41 (43%), Positives = 21/41 (51%), Gaps = 4/41 (9%)

Query: 267 WMARPDLPT--GYGG-WQAIDATPQETS-QGQYQCGPAPLE 303
           + A P  P   GYGG  Q   A P     QG YQ GPAP++
Sbjct: 62  YAAAPQYPQQGGYGGAQQGFQAAPAPYQPQGGYQAGPAPVQ 102


>Z83119-5|CAB05582.3| 1364|Caenorhabditis elegans Hypothetical protein
            R05H10.6 protein.
          Length = 1364

 Score = 29.1 bits (62), Expect = 9.8
 Identities = 19/75 (25%), Positives = 40/75 (53%), Gaps = 7/75 (9%)

Query: 438  NVSDQGRNIKASLSASSFYYNGVKFDIIKKIEGKLYVGPQKNEEVSLVVKVEDYLPKLVE 497
            ++SDQ + ++ +++ASSF Y G+     + +E  L +   +N ++ L   + DY+  +  
Sbjct: 1065 DLSDQEKKLEYTVTASSFEYRGMS----RNVEDVLDIRGGENPKIYLSKPLTDYVGGVF- 1119

Query: 498  YGNIKISAMAIVDET 512
              N+++     VD T
Sbjct: 1120 --NVQLQVRDTVDGT 1132


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.317    0.134    0.403 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,357,943
Number of Sequences: 27539
Number of extensions: 665552
Number of successful extensions: 1447
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 1443
Number of HSP's gapped (non-prelim): 10
length of query: 626
length of database: 12,573,161
effective HSP length: 86
effective length of query: 540
effective length of database: 10,204,807
effective search space: 5510595780
effective search space used: 5510595780
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 62 (29.1 bits)