GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001976-TA|BGIBMGA001976-PA|IPR002931|Transglutaminase-
like, IPR008958|Transglutaminase-like, C-terminal,
IPR013807|Transglutaminase, C-terminal
         (626 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g06400.1 68418.m00716 pentatricopeptide (PPR) repeat-containi...    33   0.75 
At5g03180.1 68418.m00266 zinc finger (C3HC4-type RING finger) fa...    32   0.99 
At4g11350.1 68417.m01831 fringe-related protein various hypothet...    32   1.3  
At3g28370.1 68416.m03545 expressed protein                             31   2.3  
At1g09190.1 68414.m01026 pentatricopeptide (PPR) repeat-containi...    31   3.0  
At5g43730.1 68418.m05346 disease resistance protein (CC-NBS-LRR ...    29   7.0  
At4g23940.1 68417.m03443 FtsH protease, putative contains simila...    29   7.0  
At4g04780.1 68417.m00700 expressed protein very low similarity t...    29   7.0  

>At5g06400.1 68418.m00716 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 1030

 Score = 32.7 bits (71), Expect = 0.75
 Identities = 31/115 (26%), Positives = 54/115 (46%), Gaps = 4/115 (3%)

Query: 410 LQTDVTFKLRDIDLV--SIGKDFKVTIDIKNVSDQGRNIKASLSASSFYYNGVKFDIIKK 467
           ++  +TF LR   ++   I K  KV + +++++D    I       +F Y    F +  K
Sbjct: 286 MEKGITFGLRTYKMLLDCIAKSEKVDV-VQSIADDMVRICEISEHDAFGYLLKSFCVSGK 344

Query: 468 IEGKL-YVGPQKNEEVSLVVKVEDYLPKLVEYGNIKISAMAIVDETKQSWADDDD 521
           I+  L  +   KN+E+ L  K  + L K +   N  + A+ IVD  K+   DD +
Sbjct: 345 IKEALELIRELKNKEMCLDAKYFEILVKGLCRANRMVDALEIVDIMKRRKLDDSN 399


>At5g03180.1 68418.m00266 zinc finger (C3HC4-type RING finger)
           family protein various predicted proteins, Arabidopsis
           thaliana ; contains Pfam profile PF00097: Zinc finger,
           C3HC4 type (RING finger)
          Length = 462

 Score = 32.3 bits (70), Expect = 0.99
 Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 5/58 (8%)

Query: 106 PIKTTRGKPWFYGQFDAVVLPACMFMLDKAEFPFNQRGDPVKVARVISKIVNSNDDDG 163
           PI+ TR  P F+ + D  V P+ +F +     P   RGD  ++    +  +N NDD G
Sbjct: 185 PIRRTRSVPTFFNK-DGSVKPSSVFRV----IPTPSRGDEKRLEMTQASKLNENDDGG 237


>At4g11350.1 68417.m01831 fringe-related protein various
           hypothetical proteins from Arabidopsis thaliana strong
           similarity to unknown protein (pir||T13026) similarity
           to predicted proteins + similar to hypothetical protein
           GB:AAC23643 [Arabidopsis thaliana] + weak similarity to
           Fringe [Schistocerca gregaria](GI:6573138);Fringe
           encodes an extracellular protein that regulates Notch
           signalling.
          Length = 489

 Score = 31.9 bits (69), Expect = 1.3
 Identities = 24/87 (27%), Positives = 40/87 (45%), Gaps = 11/87 (12%)

Query: 101 KVWVGPIKTTRGKPWFYGQF-------DAVVLPACMFMLDKAEFPF-NQRG--DPVKVAR 150
           K+W  P K  RG  W   +        D   LP+     D + FP+ N++G    ++++R
Sbjct: 111 KIWYKP-KKMRGYVWLDEEVKIKSETGDQESLPSVRISGDTSSFPYTNKQGHRSAIRISR 169

Query: 151 VISKIVNSNDDDGVLAGRWDGQYDDGT 177
           ++S+ + S D +     RW    DD T
Sbjct: 170 IVSETLMSLDSESKKNVRWFVMGDDDT 196


>At3g28370.1 68416.m03545 expressed protein
          Length = 292

 Score = 31.1 bits (67), Expect = 2.3
 Identities = 27/87 (31%), Positives = 45/87 (51%), Gaps = 3/87 (3%)

Query: 428 KDFKVTIDIKNVSDQGRNIKASLSASSFYYNGVKFDIIKKIEGKLYVGPQKNEEVSLV-V 486
           ++F+ T+D    SD G  I A++ AS    +G   + IK +  ++     K EE  L   
Sbjct: 124 REFQKTVDSSLSSDDGIGITANVKASE-DGSGADLEAIKGMLSEVNSQLAKEEEGYLAEQ 182

Query: 487 KVEDYLPKLVEYGNIKISAM-AIVDET 512
           K+++ L K ++    K+S M AI D+T
Sbjct: 183 KIQEQLQKELDDYEKKMSLMEAITDKT 209


>At1g09190.1 68414.m01026 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 999

 Score = 30.7 bits (66), Expect = 3.0
 Identities = 23/79 (29%), Positives = 34/79 (43%), Gaps = 2/79 (2%)

Query: 361 VFDPIGDEDREDITSQYKYKEGTASERLALMNGVRYSERAKRYYSVVSNLQTDVTFKLRD 420
           +F  +G ED E   S+Y   EG  ++ LA      Y   A   +  V  L T  + K R 
Sbjct: 297 IFKALGIEDME--VSEYALAEGVIADSLAKAFDGSYDLNANARWRSVMRLATRFSGKKRM 354

Query: 421 IDLVSIGKDFKVTIDIKNV 439
              +   K  KV +D K++
Sbjct: 355 THAIHCAKIAKVILDDKDL 373


>At5g43730.1 68418.m05346 disease resistance protein (CC-NBS-LRR
           class), putative domain signature CC-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 848

 Score = 29.5 bits (63), Expect = 7.0
 Identities = 18/67 (26%), Positives = 32/67 (47%), Gaps = 1/67 (1%)

Query: 327 LMRWRKDPEAETGFSMVDTNNYHIGRMVLTKKPFVFDPIGDEDREDITSQYKYKEGTASE 386
           L+ W K   A  G  + D+N  H+    L       + + +  R+D+ ++   +E    +
Sbjct: 7   LLPWNKIFTAACGCFLSDSNYIHLMESNLDALQKTMEELKN-GRDDLLARVSIEEDKGLQ 65

Query: 387 RLALMNG 393
           RLAL+NG
Sbjct: 66  RLALVNG 72


>At4g23940.1 68417.m03443 FtsH protease, putative contains
           similarity to zinc dependent protease GI:7650138 from
           [Arabidopsis thaliana]
          Length = 946

 Score = 29.5 bits (63), Expect = 7.0
 Identities = 22/65 (33%), Positives = 33/65 (50%), Gaps = 10/65 (15%)

Query: 436 IKNVSDQGRNIKASLSASSFYYNGVKFDIIKKIEGKLYV-----GPQKNEEVSLVVKVED 490
           IK   D  +  +   S  S Y +    DI+++ +GKLYV     GP+ +EE      V+D
Sbjct: 120 IKRKFDSKKKTETDKSEESVYLS----DILREYKGKLYVPEQVFGPELSEEEEFEKNVKD 175

Query: 491 YLPKL 495
            LPK+
Sbjct: 176 -LPKM 179


>At4g04780.1 68417.m00700 expressed protein very low similarity to
           SP|Q13503 RNA polymerase II holoenzyme component SRB7
           (RNAPII complex component SRB7) {Homo sapiens}
          Length = 381

 Score = 29.5 bits (63), Expect = 7.0
 Identities = 14/51 (27%), Positives = 30/51 (58%)

Query: 436 IKNVSDQGRNIKASLSASSFYYNGVKFDIIKKIEGKLYVGPQKNEEVSLVV 486
           ++N+SD   N+ A++   +     ++ ++IKK+EG+L    +  EE+  V+
Sbjct: 85  VENISDLRMNVMANMELLNKNAKQMEEELIKKMEGELLTMKENVEELGHVM 135


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.317    0.134    0.403 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,761,194
Number of Sequences: 28952
Number of extensions: 635826
Number of successful extensions: 1419
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 1417
Number of HSP's gapped (non-prelim): 9
length of query: 626
length of database: 12,070,560
effective HSP length: 85
effective length of query: 541
effective length of database: 9,609,640
effective search space: 5198815240
effective search space used: 5198815240
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 62 (29.1 bits)