GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001975-TA|BGIBMGA001975-PA|undefined
         (163 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.     23   1.7  
S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Triboliu...    22   2.9  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    22   2.9  
U09586-3|AAC47272.1|  470|Tribolium castaneum integrase protein.       21   5.1  
DQ211693-1|ABB16909.1|  314|Tribolium castaneum dorsocross protein.    21   5.1  
AJ307577-1|CAC84070.1|  301|Tribolium castaneum dachshund protein.     20   9.0  

>AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.
          Length = 697

 Score = 22.6 bits (46), Expect = 1.7
 Identities = 18/74 (24%), Positives = 26/74 (35%), Gaps = 3/74 (4%)

Query: 7   RHTDALQRIMISFKHFEKKLDKLQ---DDVNDHGKTLGDLKTMVSKLSQNTVIGPESKLD 63
           R T A Q  ++ +K  +      +   D+    GK L  L       S    +     LD
Sbjct: 355 RFTRAYQVAVLEYKGTQTNYPSYEPTYDNSRREGKQLNPLNKGTEADSSFVTLPQLHSLD 414

Query: 64  DWRVPFKTSASVQY 77
           +W    K  A  QY
Sbjct: 415 EWDDTLKEKADFQY 428


>S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Tribolium
           castaneum homeodomainprotein mRNA, complete cds. ).
          Length = 327

 Score = 21.8 bits (44), Expect = 2.9
 Identities = 8/11 (72%), Positives = 10/11 (90%)

Query: 128 RSPRTRKVETP 138
           RSPRTR+V+ P
Sbjct: 207 RSPRTRRVKKP 217


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
           adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 21.8 bits (44), Expect = 2.9
 Identities = 15/63 (23%), Positives = 27/63 (42%), Gaps = 2/63 (3%)

Query: 33  VNDHGKTLGDLKTMVSKLSQNTVIGPESKLDDWRVPFKTSASVQYEETKRDSCSVPKRKK 92
           V   G  +GD+  +   L+   ++ P  + +D+R   +  A V     K    SV  R  
Sbjct: 58  VRSDGTAVGDVPGLRQVLANGNLVFPPFRAEDYRQ--EVHAQVYVCLAKNSVGSVHSRDV 115

Query: 93  NIQ 95
           N++
Sbjct: 116 NVR 118


>U09586-3|AAC47272.1|  470|Tribolium castaneum integrase protein.
          Length = 470

 Score = 21.0 bits (42), Expect = 5.1
 Identities = 11/45 (24%), Positives = 21/45 (46%)

Query: 119 SVPPKIIRKRSPRTRKVETPRKTPTLRSHKGLENKHSKLKEQIVE 163
           +V   ++  R P TR+    +    L+ H  L  K+ K +  ++E
Sbjct: 357 AVTSGLLPVRPPLTREEIHEKARENLKHHANLRQKNQKGEVTVLE 401


>DQ211693-1|ABB16909.1|  314|Tribolium castaneum dorsocross protein.
          Length = 314

 Score = 21.0 bits (42), Expect = 5.1
 Identities = 9/24 (37%), Positives = 13/24 (54%)

Query: 129 SPRTRKVETPRKTPTLRSHKGLEN 152
           SP ++K  TP   P L  ++  EN
Sbjct: 220 SPNSKKSATPSPPPQLEVNERKEN 243


>AJ307577-1|CAC84070.1|  301|Tribolium castaneum dachshund protein.
          Length = 301

 Score = 20.2 bits (40), Expect = 9.0
 Identities = 7/16 (43%), Positives = 11/16 (68%)

Query: 95  QPLPIKSKAKSLQNQN 110
           +PLP+  KA+ L  +N
Sbjct: 189 RPLPLDQKARDLSPRN 204


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.313    0.129    0.359 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 34,171
Number of Sequences: 317
Number of extensions: 1374
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of query: 163
length of database: 114,650
effective HSP length: 52
effective length of query: 111
effective length of database: 98,166
effective search space: 10896426
effective search space used: 10896426
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.0 bits)
S2: 40 (20.2 bits)