GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001975-TA|BGIBMGA001975-PA|undefined
         (163 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    26   0.21 
DQ288392-1|ABC41342.1|  120|Apis mellifera nanos protein.              23   1.5  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                22   3.5  
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    21   6.1  
AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex det...    21   6.1  

>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 25.8 bits (54), Expect = 0.21
 Identities = 10/42 (23%), Positives = 23/42 (54%)

Query: 99  IKSKAKSLQNQNIIEAAFPISVPPKIIRKRSPRTRKVETPRK 140
           +    K++ + +  +A  P+  P  + +++SP + K  TP+K
Sbjct: 752 VAKNKKNVGSMSRNKALLPVIKPANVNKEQSPNSTKETTPKK 793


>DQ288392-1|ABC41342.1|  120|Apis mellifera nanos protein.
          Length = 120

 Score = 23.0 bits (47), Expect = 1.5
 Identities = 8/13 (61%), Positives = 11/13 (84%)

Query: 86 SVPKRKKNIQPLP 98
          + P+RKKN +PLP
Sbjct: 25 TTPRRKKNKKPLP 37


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 21.8 bits (44), Expect = 3.5
 Identities = 10/39 (25%), Positives = 20/39 (51%), Gaps = 2/39 (5%)

Query: 58  PESKLDDWRVPFKTSASVQYEETKRDSCSVPKRKKNIQP 96
           P S+     +P+ T A ++ E  + ++  V  R+  +QP
Sbjct: 122 PSSQASPTSIPYATRAEIKTESIQPETTKVDTRE--VQP 158


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 21.0 bits (42), Expect = 6.1
 Identities = 10/34 (29%), Positives = 17/34 (50%)

Query: 75  VQYEETKRDSCSVPKRKKNIQPLPIKSKAKSLQN 108
           + ++E +R     P R+KN  PL  K +    Q+
Sbjct: 327 LNFQEERRSEPVEPPRRKNNCPLHCKPELGQSQS 360


>AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 21.0 bits (42), Expect = 6.1
 Identities = 8/21 (38%), Positives = 11/21 (52%)

Query: 116 FPISVPPKIIRKRSPRTRKVE 136
           FP  +PP + R R P   + E
Sbjct: 376 FPRFIPPNVYRFRPPLNPRFE 396


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.313    0.129    0.359 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 47,290
Number of Sequences: 429
Number of extensions: 2112
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of query: 163
length of database: 140,377
effective HSP length: 53
effective length of query: 110
effective length of database: 117,640
effective search space: 12940400
effective search space used: 12940400
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.5 bits)
S2: 41 (20.6 bits)