Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001975-TA|BGIBMGA001975-PA|undefined
(163 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g51540.1 68416.m05644 expressed protein mucin 5AC, Homo sapie... 36 0.010
At3g43590.1 68416.m04638 zinc knuckle (CCHC-type) family protein... 33 0.071
At2g26440.1 68415.m03172 pectinesterase family protein contains ... 33 0.071
At2g26550.1 68415.m03185 heme oxygenase 2 (HO2) similar to heme ... 31 0.38
At5g48600.1 68418.m06011 structural maintenance of chromosomes (... 30 0.66
At2g35670.1 68415.m04375 transcription factor, putative / fertil... 29 1.5
At3g18480.1 68416.m02348 CCAAT displacement protein-related / CD... 29 2.0
At1g04890.1 68414.m00486 hypothetical protein contains Pfam prof... 29 2.0
At4g03110.2 68417.m00421 RNA-binding protein, putative similar t... 27 6.2
At4g03110.1 68417.m00420 RNA-binding protein, putative similar t... 27 6.2
At4g01660.1 68417.m00216 ABC1 family protein contains Pfam domai... 27 6.2
At3g22780.1 68416.m02872 CXC domain protein (TSO1) identical to ... 27 6.2
At3g22760.1 68416.m02870 CXC domain containing TSO1-like protein... 27 6.2
At3g01100.1 68416.m00015 early-responsive to dehydration protein... 27 6.2
At5g25210.1 68418.m02989 expressed protein 27 8.2
At4g18740.2 68417.m02770 expressed protein 27 8.2
At3g49890.1 68416.m05454 expressed protein lea32, Arabidopsis th... 27 8.2
At1g06980.1 68414.m00743 expressed protein similar to hypothetic... 27 8.2
>At3g51540.1 68416.m05644 expressed protein mucin 5AC, Homo sapiens,
PIR:S53363
Length = 438
Score = 36.3 bits (80), Expect = 0.010
Identities = 28/105 (26%), Positives = 50/105 (47%), Gaps = 7/105 (6%)
Query: 40 LGDLKTMVSKLSQNTVIGPESKLDDWRVPFKTSASVQYEETKRDSCSVPKRKKNIQPLPI 99
LGDL +V + ++NT +S + RVP ++ + T+ S P I+ +
Sbjct: 76 LGDLSRLVLE-ARNTTSKLQS-ITTTRVPLRSESDPSSRPTRSGSTIRPSNIPTIRSSSV 133
Query: 100 KSKAKSLQNQNIIEAAFPISVPPKII-RKRSPRTRKVETPRKTPT 143
K + Q I+A+ +S P + + R +P +RK +P TP+
Sbjct: 134 PKKTTTTQ----IQASASVSSPKRTVSRSLTPSSRKTPSPTSTPS 174
>At3g43590.1 68416.m04638 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 551
Score = 33.5 bits (73), Expect = 0.071
Identities = 20/81 (24%), Positives = 36/81 (44%), Gaps = 2/81 (2%)
Query: 69 FKTSASVQYEETKRDSCSVPKRKKNIQPLPIKSKAKSLQNQNIIEAAFPISVPPKIIRKR 128
++ + S + +S V KR + KS+ K+ +N + P K +K+
Sbjct: 359 YRCNGSGHFARECPNSSQVSKRDRETSTTSHKSRKKNKENSE--HDSTPHESNGKTKKKK 416
Query: 129 SPRTRKVETPRKTPTLRSHKG 149
+T K E P+ +P R H+G
Sbjct: 417 KKKTHKEEQPQTSPRKRKHRG 437
>At2g26440.1 68415.m03172 pectinesterase family protein contains
Pfam profile: PF01095 pectinesterase
Length = 547
Score = 33.5 bits (73), Expect = 0.071
Identities = 24/96 (25%), Positives = 40/96 (41%), Gaps = 4/96 (4%)
Query: 4 QRARHTDALQRIMISFKHFEKKLDKLQDDVNDHGKTLGDLKTMVSKLSQNTVI---GPES 60
QR D I+ ++ + K+QD VND K L D + +S N + G ES
Sbjct: 101 QRGSLQDCKDLHHITSSFLKRSISKIQDGVNDSRK-LADARAYLSAALTNKITCLEGLES 159
Query: 61 KLDDWRVPFKTSASVQYEETKRDSCSVPKRKKNIQP 96
+ TS + Y+ ++PK+++ P
Sbjct: 160 ASGPLKPKLVTSFTTTYKHISNSLSALPKQRRTTNP 195
>At2g26550.1 68415.m03185 heme oxygenase 2 (HO2) similar to heme
oxygenase 2 [Arabidopsis thaliana]
gi|4530595|gb|AAD22109
Length = 354
Score = 31.1 bits (67), Expect = 0.38
Identities = 17/67 (25%), Positives = 34/67 (50%), Gaps = 3/67 (4%)
Query: 94 IQPLPIKSKAKSLQNQNIIEAAFPISVPPKIIRKRSPRTRKVETPRKTPTLRSHKGLENK 153
++P P+ S + L + ++ + IS P +I +R P+ + R TPT K + K
Sbjct: 5 LRPTPLLSTPRKLTHSHLHTS---ISFPFQISTQRKPQKHLLNLCRSTPTPSQQKASQRK 61
Query: 154 HSKLKEQ 160
++ ++Q
Sbjct: 62 RTRYRKQ 68
>At5g48600.1 68418.m06011 structural maintenance of chromosomes
(SMC) family protein similar to SP|P50532 Chromosome
assembly protein XCAP-C {Xenopus laevis}; contains Pfam
profiles PF02483: SMC family C-terminal domain, PF02463:
RecF/RecN/SMC N terminal domain
Length = 1241
Score = 30.3 bits (65), Expect = 0.66
Identities = 14/50 (28%), Positives = 23/50 (46%)
Query: 4 QRARHTDALQRIMISFKHFEKKLDKLQDDVNDHGKTLGDLKTMVSKLSQN 53
Q +H + L+ + K E KL+K + D K D ++ KL +N
Sbjct: 338 QDVKHREDLKHVKQKIKKLEDKLEKDSSKIGDMTKESEDSSNLIPKLQEN 387
>At2g35670.1 68415.m04375 transcription factor, putative /
fertilization-independent seed 2 protein (FIS2)
identical to GB:AF096095
Length = 632
Score = 29.1 bits (62), Expect = 1.5
Identities = 20/91 (21%), Positives = 35/91 (38%), Gaps = 4/91 (4%)
Query: 66 RVPFKTSASVQYEETKRDSCSVPKRKKNIQPLPIKSKAKSLQNQNIIEAAFPISVPPKII 125
+VP +V S +KN+ +P K +S + + I + P I
Sbjct: 335 KVPHVNDENVSSTPRAHSSKKNKSTRKNVDNVPSPPKTRSSKKTSDILT----TTQPTIA 390
Query: 126 RKRSPRTRKVETPRKTPTLRSHKGLENKHSK 156
P+ R V + T R+H +NK ++
Sbjct: 391 ESSEPKVRHVNDDNVSSTPRAHSSKKNKSTR 421
>At3g18480.1 68416.m02348 CCAAT displacement protein-related /
CDP-related similar to CCAAT displacement protein (CDP)
(Cut-like 1) (Swiss-Prot:P39880) [Homo sapiens];
contains Pfam:PF00904 Involucrin repeat
Length = 689
Score = 28.7 bits (61), Expect = 2.0
Identities = 19/87 (21%), Positives = 38/87 (43%), Gaps = 1/87 (1%)
Query: 23 EKKLDKLQDDVNDHGKTLGDLKTMVSKLSQNTVIGPESKLDDWRVPFKTSASVQYEETKR 82
E KL + + + + ++ T +K +N + KL + PF AS+ ++ K
Sbjct: 79 ENKLSMFNSLLKGYQEEVDNI-TKRAKFGENAFLNIYQKLYEAPDPFPALASIAEQDRKL 137
Query: 83 DSCSVPKRKKNIQPLPIKSKAKSLQNQ 109
RK ++ +++A L+NQ
Sbjct: 138 SEVESENRKMKVELEEFRTEATHLKNQ 164
>At1g04890.1 68414.m00486 hypothetical protein contains Pfam profile
PF04576: Protein of unknown function, DUF593
Length = 494
Score = 28.7 bits (61), Expect = 2.0
Identities = 25/110 (22%), Positives = 48/110 (43%), Gaps = 8/110 (7%)
Query: 59 ESKLDDWRVPFKTSASVQYEETK-----RDSCSVPKRKKNIQPLPIKSKAKSLQNQNIIE 113
E D R +K+ + V Y + +D +KKN++ + +SL +II
Sbjct: 346 EGNRDKNRDLYKSDSEVAYSRVRDVYMVKDETENISKKKNLEESSVGKPKESLDENSIIV 405
Query: 114 AAFPISVPPKIIRKRSPRTRKVETPRKTPTLRSHKGL--ENKHSKLKEQI 161
+ +PP + R R + RK+ + ++ L EN+ L+E++
Sbjct: 406 SGIARKLPP-LCRPRKKSLSSSGSRRKSMSAVDYERLKIENEVELLRERL 454
>At4g03110.2 68417.m00421 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327, CUG-BP and ETR-3
like factor 3 [Homo sapiens] GI:12746392; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 439
Score = 27.1 bits (57), Expect = 6.2
Identities = 12/40 (30%), Positives = 18/40 (45%)
Query: 108 NQNIIEAAFPISVPPKIIRKRSPRTRKVETPRKTPTLRSH 147
N N ++ P SVPP++ R+ P P +R H
Sbjct: 262 NNNALQGTSPDSVPPRLARRNFPMPPGNYMGSGYPAMRGH 301
>At4g03110.1 68417.m00420 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327, CUG-BP and ETR-3
like factor 3 [Homo sapiens] GI:12746392; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 441
Score = 27.1 bits (57), Expect = 6.2
Identities = 12/40 (30%), Positives = 18/40 (45%)
Query: 108 NQNIIEAAFPISVPPKIIRKRSPRTRKVETPRKTPTLRSH 147
N N ++ P SVPP++ R+ P P +R H
Sbjct: 263 NNNALQGTSPDSVPPRLARRNFPMPPGNYMGSGYPAMRGH 302
>At4g01660.1 68417.m00216 ABC1 family protein contains Pfam domain,
PF03109: ABC1 family
Length = 623
Score = 27.1 bits (57), Expect = 6.2
Identities = 15/44 (34%), Positives = 27/44 (61%), Gaps = 4/44 (9%)
Query: 104 KSLQNQNIIEAAFPISVPPKIIRKRSPRTRKVETPRKTPTLRSH 147
+++++ + EA+ P V P + R+R PR RKV + TP R++
Sbjct: 142 RAVESGTVTEASSPSEVVPPVKRRR-PRERKVPS---TPMARAY 181
>At3g22780.1 68416.m02872 CXC domain protein (TSO1) identical to CXC
domain protein TSO1 [Arabidopsis thaliana] GI:7767425
Length = 695
Score = 27.1 bits (57), Expect = 6.2
Identities = 17/59 (28%), Positives = 25/59 (42%), Gaps = 1/59 (1%)
Query: 106 LQNQNIIEAAFPISVPPKIIRKRSPRTRKVETPRKTPTLRSHK-GLENKHSKLKEQIVE 163
L + IE+ P++ PK+IR + KTP HK G K S ++ E
Sbjct: 444 LATRKQIESRNPLAFAPKVIRNADSIMEASDDASKTPASARHKRGCNCKKSNCMKKYCE 502
>At3g22760.1 68416.m02870 CXC domain containing TSO1-like protein 1
(SOL1) identical to CXC domain containing TSO1-like
protein 1 (SOL1) [Arabidopsis thaliana] GI:7767427;
contains Pfam profile PF03638: Tesmin/TSO1-like CXC
domain; supporting cDNA
gi|7767426|gb|AF205142.1|AF205142
Length = 609
Score = 27.1 bits (57), Expect = 6.2
Identities = 18/59 (30%), Positives = 25/59 (42%), Gaps = 1/59 (1%)
Query: 106 LQNQNIIEAAFPISVPPKIIRKRSPRTRKVETPRKTPTLRSHK-GLENKHSKLKEQIVE 163
L + IE+ P++ PK+IR E KTP HK G K S ++ E
Sbjct: 371 LATRKQIESRNPLAFAPKVIRNSDSIIEVGEDASKTPASARHKRGCNCKKSNCLKKYCE 429
>At3g01100.1 68416.m00015 early-responsive to dehydration
protein-related / ERD protein-related low similarity to
ERD4 protein (early-responsive to dehydration stress)
[Arabidopsis thaliana] GI:15375406; contains Pfam
profile PF02714: Domain of unknown function DUF221
Length = 703
Score = 27.1 bits (57), Expect = 6.2
Identities = 9/13 (69%), Positives = 13/13 (100%)
Query: 21 HFEKKLDKLQDDV 33
H++KKLDKL+DD+
Sbjct: 277 HYQKKLDKLEDDM 289
>At5g25210.1 68418.m02989 expressed protein
Length = 175
Score = 26.6 bits (56), Expect = 8.2
Identities = 12/35 (34%), Positives = 17/35 (48%)
Query: 77 YEETKRDSCSVPKRKKNIQPLPIKSKAKSLQNQNI 111
YE T R +V R KNI L + ++N N+
Sbjct: 85 YEATSRQISAVGSRSKNISSLRSPFSERGIENNNL 119
>At4g18740.2 68417.m02770 expressed protein
Length = 214
Score = 26.6 bits (56), Expect = 8.2
Identities = 25/120 (20%), Positives = 50/120 (41%), Gaps = 5/120 (4%)
Query: 48 SKLSQNTVIGPESKLDDWRVPFKTSASVQYEETKRDSCSVPKRKKNIQPLPIKSKAKSLQ 107
SK +Q +I ++ + S V+ E+ +S K I + KS+ K+
Sbjct: 91 SKSNQEEIISLLKRIQS-SISKGESRGVEEEKNSDESSKEKPLTKAILDVLEKSRKKTEG 149
Query: 108 NQNIIEAAFPISV----PPKIIRKRSPRTRKVETPRKTPTLRSHKGLENKHSKLKEQIVE 163
+ ++ E V PP KR+P + PR+ + ++G++ K +++E
Sbjct: 150 DTSVKEKPPKRQVELPRPPSSFVKRTPLSSSASGPRELKEVAKNRGIKGYSKLRKSELLE 209
>At3g49890.1 68416.m05454 expressed protein lea32, Arabidopsis
thaliana, EMBL:ATH131342
Length = 220
Score = 26.6 bits (56), Expect = 8.2
Identities = 9/28 (32%), Positives = 17/28 (60%)
Query: 134 KVETPRKTPTLRSHKGLENKHSKLKEQI 161
++ P+K P LR KG+E + K+++
Sbjct: 114 EIRGPKKKPNLRPDKGVEGSSKEFKKRV 141
>At1g06980.1 68414.m00743 expressed protein similar to hypothetical
protein GI:2347189 from [Arabidopsis thaliana]
Length = 169
Score = 26.6 bits (56), Expect = 8.2
Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Query: 55 VIGPESKLDDWRVPFKTSASVQYEETKRDSCSVPKRKKNIQ 95
++ PES+L + F S E KR P+RKKN+Q
Sbjct: 65 ILSPESELKRGSIYFLIPDS-SLPEKKRRRKDTPRRKKNLQ 104
Database: arabidopsis
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.313 0.129 0.359
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,742,691
Number of Sequences: 28952
Number of extensions: 151119
Number of successful extensions: 428
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 418
Number of HSP's gapped (non-prelim): 19
length of query: 163
length of database: 12,070,560
effective HSP length: 76
effective length of query: 87
effective length of database: 9,870,208
effective search space: 858708096
effective search space used: 858708096
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 56 (26.6 bits)
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