GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001974-TA|BGIBMGA001974-PA|undefined
         (308 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC737.07c |||DNA polymerase alpha-associated DNA helicase A |S...    27   4.5  
SPCC1020.01c |pma2|SPCC1393.01|P-type proton ATPase Pma2 |Schizo...    27   4.5  
SPBC24C6.09c |||phosphoketolase |Schizosaccharomyces pombe|chr 2...    26   5.9  
SPAC19E9.02 |fin1||serine/threonine protein kinase Fin1|Schizosa...    26   5.9  
SPAC57A10.05c |pof1||F-box protein Pof1|Schizosaccharomyces pomb...    26   7.8  

>SPCC737.07c |||DNA polymerase alpha-associated DNA helicase A
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 660

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 25/106 (23%), Positives = 44/106 (41%), Gaps = 4/106 (3%)

Query: 90  INDLHTSKADLGTNCVVSDVERLSVVTYTDMLAPFRVRFVFRQ--PPLPSVANIFYLPFT 147
           +++ H S A      + S V RLSVV   + +   R+R    +    +P   N  +    
Sbjct: 127 VHERHISVALKSEEDIPSSVTRLSVVKLVNRVTYERMRHTMLEFKRSIPEYRNSLFYTLI 186

Query: 148 GRVWAAVAVCAMVYTAAIYWASKWEFNLEKRSASQFDGTVGDAMLL 193
           GR  A V++   +     Y+    E N  ++ A +F   V +  L+
Sbjct: 187 GRKKADVSIDQKLIGDIKYFNK--ELNASQKKAVKFSIAVKELSLI 230


>SPCC1020.01c |pma2|SPCC1393.01|P-type proton ATPase Pma2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1010

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 15/43 (34%), Positives = 21/43 (48%)

Query: 187 VGDAMLLTMSALSQQGCFIEPKRAPGRIMLFVLFTALMALYAA 229
           VG A  L  +A   QG F E     G I+L ++   L+ +Y A
Sbjct: 355 VGRAASLVGAAGQSQGHFTEVLNGIGTILLVLVILTLLCIYTA 397


>SPBC24C6.09c |||phosphoketolase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 825

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 13/34 (38%), Positives = 18/34 (52%)

Query: 112 LSVVTYTDMLAPFRVRFVFRQPPLPSVANIFYLP 145
           LS +   D L PF  R+ F +  L ++ N F LP
Sbjct: 137 LSALFLEDSLGPFYPRYQFTKEGLNNLINTFSLP 170


>SPAC19E9.02 |fin1||serine/threonine protein kinase
           Fin1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 722

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 10/27 (37%), Positives = 17/27 (62%)

Query: 8   RELFKRRRDVMGRPLTMANVIQDSNNT 34
           RE+F  ++ V+ R +  AN+  D NN+
Sbjct: 138 REIFHPKQSVLHRDIKPANIFLDENNS 164


>SPAC57A10.05c |pof1||F-box protein Pof1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 605

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 10/23 (43%), Positives = 14/23 (60%)

Query: 132 QPPLPSVANIFYLPFTGRVWAAV 154
           +PP P+  + F+LPF  R W  V
Sbjct: 226 KPPSPNSDSKFFLPFKTRPWKEV 248


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.325    0.136    0.416 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,363,656
Number of Sequences: 5004
Number of extensions: 54048
Number of successful extensions: 149
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 145
Number of HSP's gapped (non-prelim): 5
length of query: 308
length of database: 2,362,478
effective HSP length: 73
effective length of query: 235
effective length of database: 1,997,186
effective search space: 469338710
effective search space used: 469338710
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 54 (25.8 bits)