GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001974-TA|BGIBMGA001974-PA|undefined
         (308 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0636 + 20168180-20168462,20168961-20170303,20170401-201706...    35   0.072
07_01_0026 + 190568-190829,192475-194534,194620-195168                 33   0.38 
01_05_0725 + 24625706-24626041,24626422-24626542,24626706-246268...    29   3.6  

>07_03_0636 +
           20168180-20168462,20168961-20170303,20170401-20170678,
           20170790-20170821,20170908-20171314,20171401-20171847
          Length = 929

 Score = 35.1 bits (77), Expect = 0.072
 Identities = 38/178 (21%), Positives = 75/178 (42%), Gaps = 14/178 (7%)

Query: 83  NGQWSGMINDLHTSKADLGTNCVVSDVERLSVVTYTDMLAPFRVRFVFRQPPLPSVANIF 142
           N  ++ +I  +  +  D     +     R  +V +T       +  +     + S A  F
Sbjct: 529 NPSYNDLIEKVSDNHFDAAIGDIAIVTNRTRLVDFTQPYTESGLIILAPAREIESNAWAF 588

Query: 143 YLPFTGRVWAAVAVCAMVYTAAIYWASKWEFNLEKRSASQFDGTVGDAMLLTMSALSQQG 202
             PFT ++W+ + V   ++  A+ W       LE R+ ++F G      ++T+   S   
Sbjct: 589 LKPFTFQMWSVLGV-LFLFVGAVVWV------LEHRTNTEFRGPPRQ-QIMTVCWFSFST 640

Query: 203 CFIEPKR----APGRIMLFVLFTALMALYAAYSANIVVLL--QAPSNSITSLAQLAAS 254
            F   +     A GR +L V    ++ + ++Y+A++  LL  Q  ++ I  L  L +S
Sbjct: 641 MFFAHRENTVSALGRFVLLVWLFVVLIINSSYTASLTSLLTVQELTSGIQGLDSLISS 698


>07_01_0026 + 190568-190829,192475-194534,194620-195168
          Length = 956

 Score = 32.7 bits (71), Expect = 0.38
 Identities = 40/178 (22%), Positives = 71/178 (39%), Gaps = 14/178 (7%)

Query: 83  NGQWSGMINDLHTSKADLGTNCVVSDVERLSVVTYTDMLAPFRVRFVFRQPPLPSVANIF 142
           N  +  ++  +   + D     +     R  VV +T       +  V       S A  F
Sbjct: 527 NPSYGELVQRVAEGELDAAVGDISIVTNRTRVVDFTQPYVESGLVIVTAVRERASSAWAF 586

Query: 143 YLPFTGRVWAAVAVCAMVYTAAIYWASKWEFNLEKRSASQFDGTVGDAMLLTMSALSQQG 202
             PFT  +WA V     ++  A+ W       LE RS + F G+     L+T+   S   
Sbjct: 587 LKPFTREMWA-VTGGFFLFVGAVVWV------LEHRSNTDFRGSPRK-QLVTVFWFSFST 638

Query: 203 CFIEPKRAP----GRIMLFVLFTALMALYAAYSANI--VVLLQAPSNSITSLAQLAAS 254
            F   +       GR++L +    ++ + ++Y+A++  ++ +Q  S  I  L  L AS
Sbjct: 639 MFFAHRENTVSTLGRLVLIIWLFVVLIINSSYTASLTSILTVQQLSTGIQGLDGLIAS 696


>01_05_0725 +
           24625706-24626041,24626422-24626542,24626706-24626880,
           24627453-24627523,24627642-24628276
          Length = 445

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 15/40 (37%), Positives = 21/40 (52%)

Query: 179 SASQFDGTVGDAMLLTMSALSQQGCFIEPKRAPGRIMLFV 218
           S + F G  GD   L+ +A       IE +RAPG  +L+V
Sbjct: 43  SLASFGGGGGDGRTLSTAAFQAAVASIERRRAPGGALLYV 82


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.325    0.136    0.416 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,683,010
Number of Sequences: 37544
Number of extensions: 336561
Number of successful extensions: 734
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 732
Number of HSP's gapped (non-prelim): 4
length of query: 308
length of database: 14,793,348
effective HSP length: 82
effective length of query: 226
effective length of database: 11,714,740
effective search space: 2647531240
effective search space used: 2647531240
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 60 (28.3 bits)