GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001974-TA|BGIBMGA001974-PA|undefined
         (308 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    49   6e-08
AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled rec...    24   1.9  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    23   3.4  
AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    23   3.4  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      22   5.9  

>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 48.8 bits (111), Expect = 6e-08
 Identities = 36/173 (20%), Positives = 74/173 (42%), Gaps = 10/173 (5%)

Query: 85  QWSGMINDLHTSKADLGTNCVVSDVERLSVVTYTDMLAPFRVRFVFRQPPLPSVANIFYL 144
           +W+G+I +L   +AD+    +  + ER   + ++       +  + ++P   S    F  
Sbjct: 503 EWTGLIGELVNERADMIVAPLTINPERAEFIEFSKPFKYQGITILEKKPSRSSTLVSFLQ 562

Query: 145 PFTGRVWAAVAVCAMVYTAAIYWASKWEFNLEKRSASQFDGTVGDAMLLTMSALSQQGCF 204
           PF+  +W  V V   V    +Y   ++     +   +  DGT  DA+ L+ +     G  
Sbjct: 563 PFSNTLWILVMVSVHVVALVLYLLDRFS-PFGRFKLANTDGTEEDALNLSSAVWFAWGVL 621

Query: 205 IE-------PKRAPGRIMLFVLFTALMALYAAYSANIV--VLLQAPSNSITSL 248
           +        P+    R++  V     M + A+Y+AN+   ++L+ P   +T +
Sbjct: 622 LNSGIGEGTPRSFSARVLGMVWAGFAMIIVASYTANLAAFLVLERPKTKLTGI 674


>AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled
           receptor protein.
          Length = 399

 Score = 23.8 bits (49), Expect = 1.9
 Identities = 15/47 (31%), Positives = 20/47 (42%), Gaps = 1/47 (2%)

Query: 129 VFRQPPLPSVANIFYLPFTGRVWAAVAVCAMVYTAAIYWASKWEFNL 175
           VF   PL  V N F++        AVA+  M +  A     KW F +
Sbjct: 61  VFTYRPLRIVQN-FFIVSLAVADLAVAILVMPFNVAYLLLGKWIFGI 106


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 23.0 bits (47), Expect = 3.4
 Identities = 12/44 (27%), Positives = 19/44 (43%)

Query: 131 RQPPLPSVANIFYLPFTGRVWAAVAVCAMVYTAAIYWASKWEFN 174
           R P     A + Y   T     ++   +M Y A I++A  W+ N
Sbjct: 52  RPPKKDGQATVVYFHVTVMGLDSIDENSMTYAADIFFAQTWKDN 95


>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 23.0 bits (47), Expect = 3.4
 Identities = 5/15 (33%), Positives = 12/15 (80%)

Query: 164 AIYWASKWEFNLEKR 178
           +++W S W++N E++
Sbjct: 166 SVFWGSAWQWNEERK 180


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 22.2 bits (45), Expect = 5.9
 Identities = 11/34 (32%), Positives = 16/34 (47%)

Query: 262 DVDYNHFVFSLYKDPVRVMIHKRIDPETGNGQFY 295
           DV  NHF F L  +    M+   ++     G+FY
Sbjct: 225 DVGLNHFYFMLNHNYPPFMLSNSLNFPQIRGEFY 258


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.325    0.136    0.416 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 85,465
Number of Sequences: 429
Number of extensions: 3807
Number of successful extensions: 10
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 5
Number of HSP's gapped (non-prelim): 5
length of query: 308
length of database: 140,377
effective HSP length: 58
effective length of query: 250
effective length of database: 115,495
effective search space: 28873750
effective search space used: 28873750
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 44 (21.8 bits)