GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001974-TA|BGIBMGA001974-PA|undefined
         (308 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g32400.1 68415.m03959 glutamate receptor family protein (GLR3...    44   2e-04
At3g51480.1 68416.m05638 glutamate receptor family protein (GLR3...    33   0.24 
At1g42540.1 68414.m04905 glutamate receptor family protein (GLR3...    33   0.24 
At2g25610.1 68415.m03068 H+-transporting two-sector ATPase, C su...    29   5.2  
At5g37880.1 68418.m04564 hypothetical protein predicted protein,...    28   9.1  

>At2g32400.1 68415.m03959 glutamate receptor family protein (GLR3.7)
           (GLR5) identical to Glr5 [Arabidopsis thaliana]
           gi|6644388|gb|AAF21042; plant glutamate receptor family,
           PMID:11379626
          Length = 921

 Score = 43.6 bits (98), Expect = 2e-04
 Identities = 37/121 (30%), Positives = 58/121 (47%), Gaps = 8/121 (6%)

Query: 141 IFYLPFTGRVWAAVAVCAMVYTAAIYWASKWEFNLEKRSASQFDGTVGDAMLLTMSALSQ 200
           IF  PFT R+W  V V  +V  A + W  +   N + R   +    +   +L + S L +
Sbjct: 572 IFLRPFTSRLWCVVLVSFLV-IAVVIWILEHRINEDFRGPPR--RQLSTMLLFSFSTLFK 628

Query: 201 QGCFIEPKRAPGRIMLFVLFTALMALYAAYSANIVVLL---QAPSNSITSLAQLAASKVT 257
           +            +M+  LF  LM L A+Y+AN+  +L   Q PS +IT +  L AS+V 
Sbjct: 629 RNQEDTISNLARLVMIVWLF-LLMVLTASYTANLTSILTVQQLPS-AITGIDSLRASEVP 686

Query: 258 L 258
           +
Sbjct: 687 I 687


>At3g51480.1 68416.m05638 glutamate receptor family protein (GLR3.6)
           plant glutamate receptor family, PMID:11379626
          Length = 903

 Score = 33.1 bits (72), Expect = 0.24
 Identities = 33/156 (21%), Positives = 62/156 (39%), Gaps = 12/156 (7%)

Query: 87  SGMINDLHTSKADLGTNCVVSDVERLSVVTYTDMLAPFRVRFVFRQPPLPSVANIFYLPF 146
           S ++  + T   D G   +    ER  +  +T       +  V     L S A  F  PF
Sbjct: 516 SELVRLITTGVYDAGVGDITIITERTKMADFTQPYVESGLVVVAPVRKLGSSAMAFLRPF 575

Query: 147 TGRVWAAVAVCAMVYTAAIYWASKWEFNLEKRSASQFDGTVGDAMLLTMSALSQQGCFIE 206
           T ++W  +A  + +   A+ W       LE +   +F G      ++T    S    F  
Sbjct: 576 TPQMW-LIAAASFLIVGAVIWC------LEHKHNDEFRGP-PRRQVITTFWFSFSTLFFS 627

Query: 207 PKRAP----GRIMLFVLFTALMALYAAYSANIVVLL 238
            +       GRI+L +    ++ + ++Y+A++  +L
Sbjct: 628 HRETTTSNLGRIVLIIWLFVVLIINSSYTASLTSIL 663


>At1g42540.1 68414.m04905 glutamate receptor family protein (GLR3.3)
           plant glutamate receptor family, PMID:11379626
          Length = 933

 Score = 33.1 bits (72), Expect = 0.24
 Identities = 36/162 (22%), Positives = 64/162 (39%), Gaps = 12/162 (7%)

Query: 81  KVNGQWSGMINDLHTSKADLGTNCVVSDVERLSVVTYTDMLAPFRVRFVFRQPPLPSVAN 140
           K N  ++ M+  + T   D     V     R  +V +T   A   +  V     L S A 
Sbjct: 520 KENPSYTHMVEMITTGNFDGVVGDVAIVTNRTKIVDFTQPYAASGLVVVAPFKKLNSGAW 579

Query: 141 IFYLPFTGRVWAAVAVCAMVYTAAIYWASKWEFNLEKRSASQFDGTVGDAMLLTMSALSQ 200
            F  PF   +W AV  C  ++   + W       LE R+  +F G       +T+   S 
Sbjct: 580 AFLRPFNRLMW-AVTGCCFLFVGIVVWI------LEHRTNDEFRGP-PKRQCVTILWFSF 631

Query: 201 QGCFIEPKR----APGRIMLFVLFTALMALYAAYSANIVVLL 238
              F   +       GR++L +    ++ + ++Y+A++  +L
Sbjct: 632 STMFFAHRENTVSTLGRLVLIIWLFVVLIINSSYTASLTSIL 673


>At2g25610.1 68415.m03068 H+-transporting two-sector ATPase, C
           subunit family protein similar to SP|P23968 Vacuolar ATP
           synthase 22 kDa proteolipid subunit (EC 3.6.3.14)
           {Saccharomyces cerevisiae}; contains Pfam profile
           PF00137: ATP synthase subunit C
          Length = 178

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 23/96 (23%), Positives = 44/96 (45%), Gaps = 3/96 (3%)

Query: 152 AAVAVCAMVYTAAIYWASKWEFNLEKRSASQFDGTVGDAMLLTMSALSQQGCFIEPKRAP 211
           + VA+ A  + AA+   S + F+    + S     +G A  + ++  S  G  IE  R  
Sbjct: 2   SGVAIHASSWGAALVRISPYTFSAIGIAISIGVSVLGAAWGIYITGSSLIGAAIEAPRIT 61

Query: 212 GRIMLFVLFTALMALYAAYSANIVVLLQAPSNSITS 247
            + ++ V+F   +A+Y      + ++LQ    S+ S
Sbjct: 62  SKNLISVIFCEAVAIYGVI---VAIILQTKLESVPS 94


>At5g37880.1 68418.m04564 hypothetical protein predicted protein,
           Arabidopsis thaliana
          Length = 154

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 18/64 (28%), Positives = 32/64 (50%), Gaps = 6/64 (9%)

Query: 51  IPKICWMTAKL-AFQMLNATPRYTFSYRWGYKVNGQWSGMINDLHTSKADLGTNCVVSDV 109
           +PK+CW  A + A    +A+  Y   YR  Y    +   +++D HT K       ++ ++
Sbjct: 23  VPKMCWCGATISALMSKSASNPYRRYYRCAYAATHK---LVDDNHTFK--WVDEALLDEI 77

Query: 110 ERLS 113
           ERL+
Sbjct: 78  ERLT 81


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.325    0.136    0.416 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,925,771
Number of Sequences: 28952
Number of extensions: 268372
Number of successful extensions: 617
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 613
Number of HSP's gapped (non-prelim): 5
length of query: 308
length of database: 12,070,560
effective HSP length: 81
effective length of query: 227
effective length of database: 9,725,448
effective search space: 2207676696
effective search space used: 2207676696
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 59 (27.9 bits)