GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001973-TA|BGIBMGA001973-PA|IPR008934|Acid
phosphatase/vanadium-dependent haloperoxidase,
IPR000326|Phosphoesterase, PA-phosphatase related
         (134 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC409.18 |||phosphatidic acid phosphatase |Schizosaccharomyces...    49   2e-07
SPCC1322.03 |||TRP-like ion channel|Schizosaccharomyces pombe|ch...    29   0.33 
SPBC1683.01 |||inorganic phosphate transporter |Schizosaccharomy...    25   3.0  
SPBC337.07c |||carboxypeptidase |Schizosaccharomyces pombe|chr 2...    25   4.0  
SPBP23A10.14c |ell1||RNA polymerase II transcription elongation ...    25   5.3  
SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po...    24   7.0  
SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    24   7.0  
SPBC119.06 |sco1||copper chaperone Sco1|Schizosaccharomyces pomb...    24   7.0  

>SPBC409.18 |||phosphatidic acid phosphatase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 279

 Score = 49.2 bits (112), Expect = 2e-07
 Identities = 29/82 (35%), Positives = 43/82 (52%), Gaps = 7/82 (8%)

Query: 28  LFGVLLNLITIQLMKSIVGSPRPHFFDTCSPKEALTCEGSEYIESYTCTKAHW----LNQ 83
           L+  ++  + + L+K+ VG PRP F   C P E+    G   ++  +C+   W    L  
Sbjct: 97  LYSTMVCGLCVSLLKNAVGRPRPDFLARCQPFESTPKTG--LVDVLSCS-VPWSDKVLQD 153

Query: 84  SDRSFPSGHTSLAFHAAIYLAI 105
             RSFPSGHTS +F    +LAI
Sbjct: 154 GFRSFPSGHTSFSFAGLGFLAI 175


>SPCC1322.03 |||TRP-like ion channel|Schizosaccharomyces pombe|chr
          3|||Manual
          Length = 862

 Score = 28.7 bits (61), Expect = 0.33
 Identities = 11/33 (33%), Positives = 20/33 (60%)

Query: 25 REYLFGVLLNLITIQLMKSIVGSPRPHFFDTCS 57
          R Y   + L+++   L+ ++ GSP   +F+TCS
Sbjct: 4  RPYSVFLFLHIVFYSLLSAVNGSPSLDYFETCS 36


>SPBC1683.01 |||inorganic phosphate transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 573

 Score = 25.4 bits (53), Expect = 3.0
 Identities = 13/50 (26%), Positives = 25/50 (50%)

Query: 30  GVLLNLITIQLMKSIVGSPRPHFFDTCSPKEALTCEGSEYIESYTCTKAH 79
           GVL+  + ++  +    S + +  D   PK +L  E  E +++ + TK H
Sbjct: 247 GVLIPRLMMEETQKFKNSQQLNSGDNRDPKTSLNFEDDELVKNPSVTKGH 296


>SPBC337.07c |||carboxypeptidase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 497

 Score = 25.0 bits (52), Expect = 4.0
 Identities = 12/37 (32%), Positives = 22/37 (59%), Gaps = 1/37 (2%)

Query: 9   HTNKRIKPKDQALYWYREYLFGVLLNLITIQLMKSIV 45
           H + R+K ++   +W  +Y   +L+N +T  L +SIV
Sbjct: 110 HVDLRLK-EENFDFWKSQYRSDILINNLTETLFESIV 145


>SPBP23A10.14c |ell1||RNA polymerase II transcription elongation
           factor SpELL|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 533

 Score = 24.6 bits (51), Expect = 5.3
 Identities = 14/43 (32%), Positives = 17/43 (39%)

Query: 50  PHFFDTCSPKEALTCEGSEYIESYTCTKAHWLNQSDRSFPSGH 92
           P F DT SP        S Y + +   K +  N S    PS H
Sbjct: 320 PSFIDTNSPSMPSISSVSSYQQQHRIPKLNASNYSPLLSPSSH 362


>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 2812

 Score = 24.2 bits (50), Expect = 7.0
 Identities = 10/31 (32%), Positives = 16/31 (51%), Gaps = 1/31 (3%)

Query: 62   LTCEGSEYIESYTCTKAHWLNQSDRSFPSGH 92
            L C+   ++ S   TK  W+  S++ F  GH
Sbjct: 1456 LRCQ-INFVRSVMTTKNEWIEVSNKLFERGH 1485


>SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1038

 Score = 24.2 bits (50), Expect = 7.0
 Identities = 12/30 (40%), Positives = 16/30 (53%)

Query: 43  SIVGSPRPHFFDTCSPKEALTCEGSEYIES 72
           S+VGSPR       S +E    + SE +ES
Sbjct: 660 SVVGSPRSSLVSNNSLEEGALLKNSESLES 689


>SPBC119.06 |sco1||copper chaperone Sco1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 263

 Score = 24.2 bits (50), Expect = 7.0
 Identities = 11/36 (30%), Positives = 18/36 (50%)

Query: 38  IQLMKSIVGSPRPHFFDTCSPKEALTCEGSEYIESY 73
           I ++ ++VG      F TC P      E +EY+E +
Sbjct: 145 IDIVNNVVGDVVYPIFITCDPARDPPQEMAEYLEDF 180


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.320    0.134    0.417 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 672,117
Number of Sequences: 5004
Number of extensions: 26119
Number of successful extensions: 48
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 40
Number of HSP's gapped (non-prelim): 8
length of query: 134
length of database: 2,362,478
effective HSP length: 66
effective length of query: 68
effective length of database: 2,032,214
effective search space: 138190552
effective search space used: 138190552
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 49 (23.8 bits)