GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001972-TA|BGIBMGA001972-PA|IPR008934|Acid
phosphatase/vanadium-dependent haloperoxidase,
IPR000326|Phosphoesterase, PA-phosphatase related
         (197 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC409.18 |||phosphatidic acid phosphatase |Schizosaccharomyces...    54   2e-08
SPAC1610.04 |mug99||meiotically upregulated gene Mug99|Schizosac...    27   1.9  
SPAC1751.03 ||SPAC31A2.01|translation initiation factor eIF3m|Sc...    25   7.5  
SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1...    25   7.5  
SPBC83.05 |||mitochondrial RNA-binding protein |Schizosaccharomy...    25   9.9  
SPBC215.08c |arg4||carbamoyl-phosphate synthase Arg4|Schizosacch...    25   9.9  

>SPBC409.18 |||phosphatidic acid phosphatase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 279

 Score = 53.6 bits (123), Expect = 2e-08
 Identities = 44/145 (30%), Positives = 63/145 (43%), Gaps = 10/145 (6%)

Query: 33  MKKRKMLASAKTAGLIYRDYIYGAVVNLTILEVVKCVVGTPRPTFFDLCQPDKALTCNDS 92
           ++   +L      GL+Y   + G  V+L     +K  VG PRP F   CQP ++     +
Sbjct: 82  LRNNSLLFWKSLMGLLYSTMVCGLCVSL-----LKNAVGRPRPDFLARCQPFESTP--KT 134

Query: 93  EYVSSYKCTSTQYSRYLQIDSSRSFPSAHASLSVYCGL-FLAWYLQRRAFSWHNRSVLLI 151
             V    C+     + LQ D  RSFPS H S S + GL FLA +L  +   + N++    
Sbjct: 135 GLVDVLSCSVPWSDKVLQ-DGFRSFPSGHTSFS-FAGLGFLAIFLAGQLKMFRNKTSSWK 192

Query: 152 PXXXXXXXXXXXXCSLSRLTDHRHH 176
                          LSR  D+RHH
Sbjct: 193 VVVPLVPLSIASWIGLSRSQDYRHH 217


>SPAC1610.04 |mug99||meiotically upregulated gene
           Mug99|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 526

 Score = 27.1 bits (57), Expect = 1.9
 Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 1/50 (2%)

Query: 94  YVSSYKCTSTQYSRYLQIDSSRSFPSAHASLSVYCGLFLAWYLQRRAFSW 143
           Y ++++      S YL   S  S  +A +  SV CG+F  +YLQ    SW
Sbjct: 400 YTTAFQGLGALGSLYLYFVSHFSLYNAFSVFSV-CGVFGLYYLQSSYRSW 448


>SPAC1751.03 ||SPAC31A2.01|translation initiation factor
           eIF3m|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 402

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 22/83 (26%), Positives = 36/83 (43%), Gaps = 6/83 (7%)

Query: 3   FFLVHNLYPNTVYFQLWAVEAMLYQDDE--YNMKKRKMLAS----AKTAGLIYRDYIYGA 56
           + L   L PN  YF  W  EA +   D   +N+   K + S       A L+    +  +
Sbjct: 146 YSLFSTLAPNLKYFPDWLKEAGVSVSDHRAFNIFVSKAIQSYDDEQSFAFLLEAVKMDNS 205

Query: 57  VVNLTILEVVKCVVGTPRPTFFD 79
             +  + E+V+  V +P+  FFD
Sbjct: 206 TADEAVRELVQRAVNSPKYFFFD 228


>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 857

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 14/46 (30%), Positives = 22/46 (47%)

Query: 71  GTPRPTFFDLCQPDKALTCNDSEYVSSYKCTSTQYSRYLQIDSSRS 116
           G  +PT F+   P K ++   SE+      T+T  S Y   +SS +
Sbjct: 249 GPSKPTPFESHGPAKQISVQPSEHPKPSISTTTTGSSYRSAESSHA 294


>SPBC83.05 |||mitochondrial RNA-binding protein
          |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 773

 Score = 24.6 bits (51), Expect = 9.9
 Identities = 15/51 (29%), Positives = 24/51 (47%), Gaps = 3/51 (5%)

Query: 4  FLVHNLYPNTVYFQLWAVEAMLYQDDEYNMKKRKMLASAKTAGLIYRDYIY 54
          F V NL     YF +    A+L+Q+   N+KK+   A   +  +   D I+
Sbjct: 50 FFVDNLVNTPTYFYIQRYTALLFQN---NLKKQLSAAFPSSDTMQLEDIIF 97


>SPBC215.08c |arg4||carbamoyl-phosphate synthase
            Arg4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1160

 Score = 24.6 bits (51), Expect = 9.9
 Identities = 14/43 (32%), Positives = 26/43 (60%), Gaps = 3/43 (6%)

Query: 29   DEYNMKKRKMLASAKTAGLIYRDYIY--GAV-VNLTILEVVKC 68
            ++YN++    LASA+   ++ +DY+    AV  N+T++  V C
Sbjct: 1080 EKYNIRSVFNLASARGKNVLDQDYVMRRNAVDFNVTLINDVNC 1122


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.326    0.136    0.444 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 823,892
Number of Sequences: 5004
Number of extensions: 30486
Number of successful extensions: 97
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 94
Number of HSP's gapped (non-prelim): 6
length of query: 197
length of database: 2,362,478
effective HSP length: 69
effective length of query: 128
effective length of database: 2,017,202
effective search space: 258201856
effective search space used: 258201856
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.7 bits)
S2: 51 (24.6 bits)