GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001972-TA|BGIBMGA001972-PA|IPR008934|Acid
phosphatase/vanadium-dependent haloperoxidase,
IPR000326|Phosphoesterase, PA-phosphatase related
         (197 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_5982| Best HMM Match : PAP2 (HMM E-Value=8.3e-19)                   60   9e-10
SB_36347| Best HMM Match : No HMM Matches (HMM E-Value=.)              49   2e-06
SB_4846| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   1.5  

>SB_5982| Best HMM Match : PAP2 (HMM E-Value=8.3e-19)
          Length = 320

 Score = 60.5 bits (140), Expect = 9e-10
 Identities = 44/158 (27%), Positives = 77/158 (48%), Gaps = 12/158 (7%)

Query: 27  QDDEYNMKKR-KMLASAKTAGLIYRD--YIYGAVVNLTILEVVKCVVGTPRPTFFDLCQP 83
           +D+E++ KK   ++  +    +++R   ++YG  +   I  VV  + G   P F  +C+P
Sbjct: 97  EDEEWDDKKLGSVVIPSWIIRMLHRMAVFLYGIPLLFLIFNVVSVMTGRLTPNFLAVCKP 156

Query: 84  DKAL-TCNDSEYVSSYKCTSTQYSRYLQIDSSR-SFPSAHASLSVYCGLFLAWYLQRRAF 141
           +  L  CN+  Y++   CT       L +  +R SFPS +  +++YC +F+A  LQ  A 
Sbjct: 157 NTTLFDCNEG-YITKDVCTGDA----LDVKRARLSFPSVNTLVAMYCMVFVALSLQ--AA 209

Query: 142 SWHNRSVLLIPXXXXXXXXXXXXCSLSRLTDHRHHWWD 179
              +R+ LL                +SR+ D+ HHW D
Sbjct: 210 ECLSRTKLLRTALQVAAILGALAVGMSRVKDYSHHWSD 247


>SB_36347| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 454

 Score = 49.2 bits (112), Expect = 2e-06
 Identities = 25/74 (33%), Positives = 42/74 (56%), Gaps = 3/74 (4%)

Query: 52  YIYGAVVNLTILEVVKCVVGTPRPTFFDLCQPDKALTCNDSEYVSSYKCTSTQYSRYLQI 111
           +++GA VN  + +V K  VG  RP F  +C+PD +L    +E+++S  CT       +  
Sbjct: 379 FLFGAAVNTLLTDVGKYSVGRLRPHFLTMCKPDTSLFNCTTEFITSVVCTG---DPAIIR 435

Query: 112 DSSRSFPSAHASLS 125
           ++  SFPS H+S +
Sbjct: 436 EARLSFPSGHSSFA 449



 Score = 48.0 bits (109), Expect = 5e-06
 Identities = 25/74 (33%), Positives = 41/74 (55%), Gaps = 3/74 (4%)

Query: 52  YIYGAVVNLTILEVVKCVVGTPRPTFFDLCQPDKALTCNDSEYVSSYKCTSTQYSRYLQI 111
           +++GA VN  + +V K  VG  RP F  +C+PD +L    +E+++S  CT       +  
Sbjct: 149 FLFGAAVNTLLTDVGKYSVGRLRPHFLTVCKPDTSLFNCTTEFITSVVCTG---DPAIIR 205

Query: 112 DSSRSFPSAHASLS 125
            +  SFPS H+S +
Sbjct: 206 QARLSFPSGHSSFA 219


>SB_4846| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 684

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 13/33 (39%), Positives = 16/33 (48%)

Query: 89  CNDSEYVSSYKCTSTQYSRYLQIDSSRSFPSAH 121
           CND  Y   Y+CT T Y    +   S S PS +
Sbjct: 81  CNDFHYFKRYQCTITSYQSSWRSKFSFSVPSGY 113


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.326    0.136    0.444 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,985,169
Number of Sequences: 59808
Number of extensions: 213482
Number of successful extensions: 550
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 544
Number of HSP's gapped (non-prelim): 4
length of query: 197
length of database: 16,821,457
effective HSP length: 79
effective length of query: 118
effective length of database: 12,096,625
effective search space: 1427401750
effective search space used: 1427401750
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.7 bits)
S2: 58 (27.5 bits)