GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001972-TA|BGIBMGA001972-PA|IPR008934|Acid
phosphatase/vanadium-dependent haloperoxidase,
IPR000326|Phosphoesterase, PA-phosphatase related
         (197 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF098992-15|AAN39673.1|  340|Caenorhabditis elegans Hypothetical...    79   2e-15
AF098992-14|AAD34669.1|  346|Caenorhabditis elegans Hypothetical...    79   2e-15
AF098992-13|AAN39672.1|  385|Caenorhabditis elegans Hypothetical...    79   2e-15
U28738-7|AAA68312.1|  341|Caenorhabditis elegans Hypothetical pr...    77   6e-15
U28738-6|AAT92056.1|  274|Caenorhabditis elegans Hypothetical pr...    77   6e-15
U28738-5|AAT92055.1|  342|Caenorhabditis elegans Hypothetical pr...    77   6e-15
Z68105-4|CAA92120.2|  304|Caenorhabditis elegans Hypothetical pr...    57   7e-09
Z49130-4|CAA88966.1|  396|Caenorhabditis elegans Hypothetical pr...    38   0.004
U00053-1|AAZ94293.1|  548|Caenorhabditis elegans Acetylcholine r...    27   6.7  
L11247-2|AAK84521.1| 1274|Caenorhabditis elegans Npc1 (human nie...    27   6.7  
Z22180-2|CAD54146.1|  392|Caenorhabditis elegans Hypothetical pr...    27   8.9  
Z22180-1|CAA80176.2|  371|Caenorhabditis elegans Hypothetical pr...    27   8.9  

>AF098992-15|AAN39673.1|  340|Caenorhabditis elegans Hypothetical
           protein F53C3.13c protein.
          Length = 340

 Score = 79.0 bits (186), Expect = 2e-15
 Identities = 42/130 (32%), Positives = 68/130 (52%), Gaps = 5/130 (3%)

Query: 52  YIYGAVVNLTILEVVKCVVGTPRPTFFDLCQPDKAL-TCNDSE-YVSSYKCTSTQYSRYL 109
           +  G   N  ++++ K  +G  RP F D+C+PD    TC+  + Y++ +KCT+T   +  
Sbjct: 116 FFVGVCFNQLMVDIAKYTIGRQRPHFMDVCRPDIGYQTCSQPDLYITDFKCTTTDTKKI- 174

Query: 110 QIDSSRSFPSAHASLSVYCGLFLAWYLQRRAFSWHNRSVLLIPXXXXXXXXXXXXCSLSR 169
             ++  SF S H++ S Y   F + YLQ R F     S LL+P             SL+R
Sbjct: 175 -HEAQLSFYSGHSAFSFYAAWFTSLYLQARLFR-PLFSRLLLPVIQFLLFGGAAYVSLTR 232

Query: 170 LTDHRHHWWD 179
           ++D++HHW D
Sbjct: 233 VSDYKHHWSD 242


>AF098992-14|AAD34669.1|  346|Caenorhabditis elegans Hypothetical
           protein F53C3.13a protein.
          Length = 346

 Score = 79.0 bits (186), Expect = 2e-15
 Identities = 42/130 (32%), Positives = 68/130 (52%), Gaps = 5/130 (3%)

Query: 52  YIYGAVVNLTILEVVKCVVGTPRPTFFDLCQPDKAL-TCNDSE-YVSSYKCTSTQYSRYL 109
           +  G   N  ++++ K  +G  RP F D+C+PD    TC+  + Y++ +KCT+T   +  
Sbjct: 116 FFVGVCFNQLMVDIAKYTIGRQRPHFMDVCRPDIGYQTCSQPDLYITDFKCTTTDTKKI- 174

Query: 110 QIDSSRSFPSAHASLSVYCGLFLAWYLQRRAFSWHNRSVLLIPXXXXXXXXXXXXCSLSR 169
             ++  SF S H++ S Y   F + YLQ R F     S LL+P             SL+R
Sbjct: 175 -HEAQLSFYSGHSAFSFYAAWFTSLYLQARLFR-PLFSRLLLPVIQFLLFGGAAYVSLTR 232

Query: 170 LTDHRHHWWD 179
           ++D++HHW D
Sbjct: 233 VSDYKHHWSD 242


>AF098992-13|AAN39672.1|  385|Caenorhabditis elegans Hypothetical
           protein F53C3.13b protein.
          Length = 385

 Score = 79.0 bits (186), Expect = 2e-15
 Identities = 42/130 (32%), Positives = 68/130 (52%), Gaps = 5/130 (3%)

Query: 52  YIYGAVVNLTILEVVKCVVGTPRPTFFDLCQPDKAL-TCNDSE-YVSSYKCTSTQYSRYL 109
           +  G   N  ++++ K  +G  RP F D+C+PD    TC+  + Y++ +KCT+T   +  
Sbjct: 116 FFVGVCFNQLMVDIAKYTIGRQRPHFMDVCRPDIGYQTCSQPDLYITDFKCTTTDTKKI- 174

Query: 110 QIDSSRSFPSAHASLSVYCGLFLAWYLQRRAFSWHNRSVLLIPXXXXXXXXXXXXCSLSR 169
             ++  SF S H++ S Y   F + YLQ R F     S LL+P             SL+R
Sbjct: 175 -HEAQLSFYSGHSAFSFYAAWFTSLYLQARLFR-PLFSRLLLPVIQFLLFGGAAYVSLTR 232

Query: 170 LTDHRHHWWD 179
           ++D++HHW D
Sbjct: 233 VSDYKHHWSD 242


>U28738-7|AAA68312.1|  341|Caenorhabditis elegans Hypothetical
           protein T28D9.3a protein.
          Length = 341

 Score = 77.4 bits (182), Expect = 6e-15
 Identities = 44/142 (30%), Positives = 70/142 (49%), Gaps = 6/142 (4%)

Query: 55  GAVVNLTILEVVKCVVGTPRPTFFDLCQ--PDKALTCNDSEYVSSYKCTSTQYSRYLQID 112
           G V+N+ +  V K VVG  RP F D+C+   D  +T +   Y++ Y CT       L ++
Sbjct: 132 GFVMNIALNIVTKHVVGRLRPHFLDVCKLANDTCVTGDSHRYITDYTCTGPPE---LVLE 188

Query: 113 SSRSFPSAHASLSVYCGLFLAWYLQRRAFSWHNRSVLLIPXXXXXXXXXXXXCSLSRLTD 172
           + +SF S H+++S+YC  + A Y+Q R     N  + ++P             S SR+TD
Sbjct: 189 ARKSFYSGHSAVSLYCATWSALYIQARLGPVLNNRI-VVPISQTLMFMIGLGISFSRITD 247

Query: 173 HRHHWWDXXXXXXXXXXSVMYT 194
           ++HHW D            +YT
Sbjct: 248 NKHHWSDVLVGIFIGIFLAVYT 269


>U28738-6|AAT92056.1|  274|Caenorhabditis elegans Hypothetical
           protein T28D9.3c protein.
          Length = 274

 Score = 77.4 bits (182), Expect = 6e-15
 Identities = 44/142 (30%), Positives = 70/142 (49%), Gaps = 6/142 (4%)

Query: 55  GAVVNLTILEVVKCVVGTPRPTFFDLCQ--PDKALTCNDSEYVSSYKCTSTQYSRYLQID 112
           G V+N+ +  V K VVG  RP F D+C+   D  +T +   Y++ Y CT       L ++
Sbjct: 133 GFVMNIALNIVTKHVVGRLRPHFLDVCKLANDTCVTGDSHRYITDYTCTGPPE---LVLE 189

Query: 113 SSRSFPSAHASLSVYCGLFLAWYLQRRAFSWHNRSVLLIPXXXXXXXXXXXXCSLSRLTD 172
           + +SF S H+++S+YC  + A Y+Q R     N  + ++P             S SR+TD
Sbjct: 190 ARKSFYSGHSAVSLYCATWSALYIQARLGPVLNNRI-VVPISQTLMFMIGLGISFSRITD 248

Query: 173 HRHHWWDXXXXXXXXXXSVMYT 194
           ++HHW D            +YT
Sbjct: 249 NKHHWSDVLVGIFIGIFLAVYT 270


>U28738-5|AAT92055.1|  342|Caenorhabditis elegans Hypothetical
           protein T28D9.3b protein.
          Length = 342

 Score = 77.4 bits (182), Expect = 6e-15
 Identities = 44/142 (30%), Positives = 70/142 (49%), Gaps = 6/142 (4%)

Query: 55  GAVVNLTILEVVKCVVGTPRPTFFDLCQ--PDKALTCNDSEYVSSYKCTSTQYSRYLQID 112
           G V+N+ +  V K VVG  RP F D+C+   D  +T +   Y++ Y CT       L ++
Sbjct: 133 GFVMNIALNIVTKHVVGRLRPHFLDVCKLANDTCVTGDSHRYITDYTCTGPPE---LVLE 189

Query: 113 SSRSFPSAHASLSVYCGLFLAWYLQRRAFSWHNRSVLLIPXXXXXXXXXXXXCSLSRLTD 172
           + +SF S H+++S+YC  + A Y+Q R     N  + ++P             S SR+TD
Sbjct: 190 ARKSFYSGHSAVSLYCATWSALYIQARLGPVLNNRI-VVPISQTLMFMIGLGISFSRITD 248

Query: 173 HRHHWWDXXXXXXXXXXSVMYT 194
           ++HHW D            +YT
Sbjct: 249 NKHHWSDVLVGIFIGIFLAVYT 270


>Z68105-4|CAA92120.2|  304|Caenorhabditis elegans Hypothetical
           protein F13E6.5 protein.
          Length = 304

 Score = 57.2 bits (132), Expect = 7e-09
 Identities = 43/158 (27%), Positives = 74/158 (46%), Gaps = 6/158 (3%)

Query: 21  VEAMLYQDDEYNMKKRKMLASAKTAGLIYRDYIYGAVVNLTILEVVKCVVGTPRPTFFDL 80
           VEA+L+   + + +  K   SA T  + Y  Y+         +E +KC VG  RP FF +
Sbjct: 104 VEAILHFKSKGSNRLAKFF-SATT--ITYLKYLLMYAACTFAMEFLKCYVGRLRPHFFSV 160

Query: 81  CQPD-KALTCNDSE-YVSSYKCTSTQYSRYLQIDSSRSFPSAHASLSVYCGLFLAWYLQR 138
           C+PD   + C D + ++ S     T  +      +  SFPS H + + +  LF+  YL+R
Sbjct: 161 CKPDWSKVDCTDKQSFIDSSDLVCTNPNPRKIRTARTSFPSGHTAAAFHVFLFVYIYLRR 220

Query: 139 RAFSWHNRSVLLIPXXXX-XXXXXXXXCSLSRLTDHRH 175
            A +   + ++ I              C+++R+TD+ H
Sbjct: 221 MAENTGIKEIITIRNILVPSYALWTVFCAVTRVTDNWH 258


>Z49130-4|CAA88966.1|  396|Caenorhabditis elegans Hypothetical
           protein T06D8.3 protein.
          Length = 396

 Score = 38.3 bits (85), Expect = 0.004
 Identities = 33/133 (24%), Positives = 55/133 (41%), Gaps = 10/133 (7%)

Query: 52  YIYGAVVNLTILEVVKCVVGTPRPTFFDLCQPDKALTCNDSEYVSSYKCTSTQYSRYLQI 111
           Y+ G ++    ++ +K + G  RP F  LC  + ++T   +    S   +      Y   
Sbjct: 150 YLAGLLIVQIFVDTIKLMTGYQRPYFLSLC--NVSITACTAPLEHSPSPSPHLACNYRGA 207

Query: 112 DSSR----SFPSAHASLSVYCGLFLAWYLQRRAFSWHNRSV-LLIPXXXXXXXXXXXXCS 166
           D  R    +FPS HA +S Y   F + Y+    +  + R   LL P             S
Sbjct: 208 DELRYAWLTFPSLHAVVSSYAACFASLYIY---YMINLRGAPLLRPLLIFGFMGLCIVDS 264

Query: 167 LSRLTDHRHHWWD 179
            SR+  +++HW D
Sbjct: 265 FSRINGYKNHWRD 277


>U00053-1|AAZ94293.1|  548|Caenorhabditis elegans Acetylcholine
           receptor protein 5 protein.
          Length = 548

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 15/53 (28%), Positives = 23/53 (43%)

Query: 15  YFQLWAVEAMLYQDDEYNMKKRKMLASAKTAGLIYRDYIYGAVVNLTILEVVK 67
           Y Q+W  +  LY  +E   KK + L +A+     +     GA V L    + K
Sbjct: 184 YHQIWIPDTYLYNSEELEQKKTESLMNAQLETGHWNQKKDGAKVQLMFPAIYK 236


>L11247-2|AAK84521.1| 1274|Caenorhabditis elegans Npc1 (human
           niemann pick c disease)related protein 2 protein.
          Length = 1274

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 18/50 (36%), Positives = 23/50 (46%), Gaps = 1/50 (2%)

Query: 80  LCQPDKALTCNDSEYVSSYKCTSTQYSRYLQIDSSRSF-PSAHASLSVYC 128
           LCQ    +T  D E  S++    T  S YL I  +RS  P+  A    YC
Sbjct: 24  LCQAKCVMTECDGEEDSNHPPCKTNKSTYLPITVTRSLNPTYMARFEKYC 73


>Z22180-2|CAD54146.1|  392|Caenorhabditis elegans Hypothetical
           protein K11H3.1b protein.
          Length = 392

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 20/55 (36%), Positives = 26/55 (47%), Gaps = 5/55 (9%)

Query: 40  ASAKTAGLIYRDYIYGAVVNLTILEVVKCV----VGTPRPTFFDLCQ-PDKALTC 89
           A+  T GL Y D    AV+ L ++E  K V     G+   TFF+ C   D   TC
Sbjct: 254 AAGFTDGLGYGDNTKAAVIRLGLMETTKFVEHYYPGSNLQTFFESCGIADLITTC 308


>Z22180-1|CAA80176.2|  371|Caenorhabditis elegans Hypothetical
           protein K11H3.1a protein.
          Length = 371

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 20/55 (36%), Positives = 26/55 (47%), Gaps = 5/55 (9%)

Query: 40  ASAKTAGLIYRDYIYGAVVNLTILEVVKCV----VGTPRPTFFDLCQ-PDKALTC 89
           A+  T GL Y D    AV+ L ++E  K V     G+   TFF+ C   D   TC
Sbjct: 233 AAGFTDGLGYGDNTKAAVIRLGLMETTKFVEHYYPGSNLQTFFESCGIADLITTC 287


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.326    0.136    0.444 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,447,046
Number of Sequences: 27539
Number of extensions: 162997
Number of successful extensions: 456
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 432
Number of HSP's gapped (non-prelim): 13
length of query: 197
length of database: 12,573,161
effective HSP length: 78
effective length of query: 119
effective length of database: 10,425,119
effective search space: 1240589161
effective search space used: 1240589161
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.7 bits)
S2: 57 (27.1 bits)