Silkworm BLAST Result against human

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001971-TA|BGIBMGA001971-PA|undefined
         (55 letters)

Database: human 
           224,733 sequences; 73,234,838 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AK222956-1|BAD96676.1|  468|Homo sapiens TAP binding protein-lik...    33   0.11 
BC015017-1|AAH15017.1|  468|Homo sapiens TAP binding protein-lik...    30   1.0  
AK223163-1|BAD96883.1|  468|Homo sapiens TAP binding protein-lik...    30   1.0  
AK002056-1|BAB41077.1|  468|Homo sapiens protein ( Homo sapiens ...    30   1.0  
AK001005-1|BAA91465.1|  468|Homo sapiens protein ( Homo sapiens ...    30   1.3  

>AK222956-1|BAD96676.1|  468|Homo sapiens TAP binding protein-like
           variant protein.
          Length = 468

 Score = 33.5 bits (73), Expect = 0.11
 Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 1/51 (1%)

Query: 1   MKMNNKFINVALRSMAQVETASQ-PALSGVPAVEMQAKHSVLWHLLIDLPI 50
           ++M    +  A R MA V+ +   P++S V      AK+ VLWH  ++LP+
Sbjct: 129 LQMTETTVKTAARFMANVQVSGGGPSISLVMKTPRVAKNEVLWHPTLNLPL 179


>BC015017-1|AAH15017.1|  468|Homo sapiens TAP binding protein-like
           protein.
          Length = 468

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 1/51 (1%)

Query: 1   MKMNNKFINVALRSMAQVETASQ-PALSGVPAVEMQAKHSVLWHLLIDLPI 50
           ++M    +  A   MA V+ +   P++S V      AK+ VLWH  ++LP+
Sbjct: 129 LQMTETTVKTAAWFMANVQVSGGGPSISLVMKTPRVAKNEVLWHPTLNLPL 179


>AK223163-1|BAD96883.1|  468|Homo sapiens TAP binding protein-like
           variant protein.
          Length = 468

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 1/51 (1%)

Query: 1   MKMNNKFINVALRSMAQVETASQ-PALSGVPAVEMQAKHSVLWHLLIDLPI 50
           ++M    +  A   MA V+ +   P++S V      AK+ VLWH  ++LP+
Sbjct: 129 LQMTETTVKTAAWFMANVQVSGGGPSISLVMKTPRVAKNEVLWHPTLNLPL 179


>AK002056-1|BAB41077.1|  468|Homo sapiens protein ( Homo sapiens
           cDNA FLJ11194 fis, clone PLACE1007632, weakly similar to
           POLIOVIRUS RECEPTOR PRECURSOR. ).
          Length = 468

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 1/51 (1%)

Query: 1   MKMNNKFINVALRSMAQVETASQ-PALSGVPAVEMQAKHSVLWHLLIDLPI 50
           ++M    +  A   MA V+ +   P++S V      AK+ VLWH  ++LP+
Sbjct: 129 LQMTETTVKTAAWFMANVQVSGGGPSISLVMKTPRVAKNEVLWHPTLNLPL 179


>AK001005-1|BAA91465.1|  468|Homo sapiens protein ( Homo sapiens
           cDNA FLJ10143 fis, clone HEMBA1003281, weakly similar to
           POLIOVIRUS RECEPTOR PRECURSOR. ).
          Length = 468

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 15/51 (29%), Positives = 27/51 (52%), Gaps = 1/51 (1%)

Query: 1   MKMNNKFINVALRSMAQVETASQ-PALSGVPAVEMQAKHSVLWHLLIDLPI 50
           ++M    +  A   MA V+ + + P++S V      AK+  LWH  ++LP+
Sbjct: 129 LQMTETTVKTAAWFMANVQVSGRGPSISLVMKTPRVAKNEALWHPTLNLPL 179


  Database: human
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 73,234,838
  Number of sequences in database:  224,733
  
Lambda     K      H
   0.321    0.131    0.372 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,974,768
Number of Sequences: 224733
Number of extensions: 166626
Number of successful extensions: 352
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 352
Number of HSP's gapped (non-prelim): 5
length of query: 55
length of database: 73,234,838
effective HSP length: 35
effective length of query: 20
effective length of database: 65,369,183
effective search space: 1307383660
effective search space used: 1307383660
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 57 (27.1 bits)